Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C9J78_RS13950 Genome accession   NZ_CP028165
Coordinates   2755561..2756433 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN064037     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2750561..2761433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J78_RS13930 (C9J78_13920) sucC 2750676..2751842 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  C9J78_RS13935 (C9J78_13925) sucD 2751864..2752772 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  C9J78_RS13940 (C9J78_13930) - 2752999..2754117 (+) 1119 WP_001041654.1 LysM peptidoglycan-binding domain-containing protein -
  C9J78_RS13945 (C9J78_13935) fmhC 2754145..2755389 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  C9J78_RS13950 (C9J78_13940) dprA 2755561..2756433 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  C9J78_RS13955 (C9J78_13945) topA 2756607..2758682 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  C9J78_RS13960 (C9J78_13950) trmFO 2758838..2760145 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=281962 C9J78_RS13950 WP_000620182.1 2755561..2756433(+) (dprA) [Staphylococcus aureus strain CFSAN064037]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=281962 C9J78_RS13950 WP_000620182.1 2755561..2756433(+) (dprA) [Staphylococcus aureus strain CFSAN064037]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment