Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C9J78_RS01655 Genome accession   NZ_CP028165
Coordinates   351414..352100 (-) Length   228 a.a.
NCBI ID   WP_078064899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN064037     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346414..357100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J78_RS01635 (C9J78_01635) rpsT 347328..347579 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  C9J78_RS01640 (C9J78_01640) holA 347624..348598 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  C9J78_RS01645 (C9J78_01645) comEC 348655..350856 (-) 2202 WP_025174647.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C9J78_RS01650 (C9J78_01650) - 350861..351322 (-) 462 WP_000439693.1 ComE operon protein 2 -
  C9J78_RS01655 (C9J78_01655) comEA 351414..352100 (-) 687 WP_078064899.1 ComEA family DNA-binding protein Machinery gene
  C9J78_RS01660 (C9J78_01660) - 352140..352856 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  C9J78_RS01665 (C9J78_01665) rsfS 352859..353212 (-) 354 WP_001088020.1 ribosome silencing factor -
  C9J78_RS01670 (C9J78_01670) yqeK 353213..353797 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  C9J78_RS01675 (C9J78_01675) nadD 353787..354356 (-) 570 WP_000725161.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  C9J78_RS01680 (C9J78_01680) yhbY 354359..354649 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  C9J78_RS01685 (C9J78_01685) aroE 354653..355459 (-) 807 WP_000666751.1 shikimate dehydrogenase -
  C9J78_RS01690 (C9J78_01690) yqeH 355473..356573 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.67 Da        Isoelectric Point: 9.7956

>NTDB_id=281931 C9J78_RS01655 WP_078064899.1 351414..352100(-) (comEA) [Staphylococcus aureus strain CFSAN064037]
MVLLYQFLLRYKDFLTQWKLYIISVVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSEISSLSKLEDVQVKDRDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVDPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=281931 C9J78_RS01655 WP_078064899.1 351414..352100(-) (comEA) [Staphylococcus aureus strain CFSAN064037]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGTTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATAGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGACCCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment