Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SPCG_RS02590 Genome accession   NC_010582
Coordinates   494451..495500 (+) Length   349 a.a.
NCBI ID   WP_000653779.1    Uniprot ID   A0A0H2UNU6
Organism   Streptococcus pneumoniae CGSP14     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 489451..500500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPCG_RS13290 - 490282..490915 (+) 634 Protein_490 DJ-1/PfpI family protein -
  SPCG_RS02570 (SPCG_0491) dnaJ 491122..492258 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  SPCG_RS02575 (SPCG_0492) - 492948..493235 (-) 288 WP_000777760.1 hypothetical protein -
  SPCG_RS02580 (SPCG_0493) - 493245..493655 (-) 411 WP_001278301.1 HIT family protein -
  SPCG_RS02585 (SPCG_0494) pptA 493723..494454 (+) 732 WP_000889924.1 ABC transporter ATP-binding protein Regulator
  SPCG_RS02590 (SPCG_0495) pptB 494451..495500 (+) 1050 WP_000653779.1 ABC transporter permease Regulator
  SPCG_RS02595 (SPCG_0496) - 495668..495997 (-) 330 WP_000132572.1 hypothetical protein -
  SPCG_RS02600 (SPCG_0497) - 496274..496612 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  SPCG_RS02605 (SPCG_0498) comE/blpR 496617..497354 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  SPCG_RS02610 (SPCG_0499) - 497368..498708 (+) 1341 WP_001099895.1 sensor histidine kinase -
  SPCG_RS02615 blpC 498753..498908 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  SPCG_RS02620 (SPCG_0500) - 498965..500326 (-) 1362 WP_001069098.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40505.54 Da        Isoelectric Point: 9.8750

>NTDB_id=28186 SPCG_RS02590 WP_000653779.1 494451..495500(+) (pptB) [Streptococcus pneumoniae CGSP14]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGTATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=28186 SPCG_RS02590 WP_000653779.1 494451..495500(+) (pptB) [Streptococcus pneumoniae CGSP14]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAACTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2UNU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment