Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   UTEX3055_RS13245 Genome accession   NZ_CP033061
Coordinates   2641751..2642128 (+) Length   125 a.a.
NCBI ID   WP_011377923.1    Uniprot ID   Q79PF9
Organism   Synechococcus elongatus UTEX 3055     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2636751..2647128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS13225 - 2637656..2638402 (+) 747 WP_126148145.1 phycocyanobilin:ferredoxin oxidoreductase -
  UTEX3055_RS13230 - 2638491..2639591 (+) 1101 WP_126148146.1 HlyD family efflux transporter periplasmic adaptor subunit -
  UTEX3055_RS13235 devC 2639575..2640753 (+) 1179 WP_126148147.1 ABC transporter permease DevC -
  UTEX3055_RS13240 truB 2640774..2641658 (-) 885 WP_126148148.1 tRNA pseudouridine(55) synthase TruB -
  UTEX3055_RS13245 pilH 2641751..2642128 (+) 378 WP_011377923.1 response regulator Machinery gene
  UTEX3055_RS13250 rpmA 2642250..2642516 (-) 267 WP_011242644.1 50S ribosomal protein L27 -
  UTEX3055_RS13255 rplU 2642551..2642934 (-) 384 WP_011377922.1 50S ribosomal protein L21 -
  UTEX3055_RS13260 - 2643172..2644026 (+) 855 WP_011377921.1 circadian clock protein KaiA -
  UTEX3055_RS13265 kaiB 2644116..2644424 (+) 309 WP_011242647.1 circadian clock protein KaiB -
  UTEX3055_RS13270 kaiC 2644474..2646033 (+) 1560 WP_011242648.1 circadian clock protein KaiC -
  UTEX3055_RS13275 - 2646030..2647037 (-) 1008 WP_126148149.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13841.82 Da        Isoelectric Point: 4.5355

>NTDB_id=281736 UTEX3055_RS13245 WP_011377923.1 2641751..2642128(+) (pilH) [Synechococcus elongatus UTEX 3055]
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=281736 UTEX3055_RS13245 WP_011377923.1 2641751..2642128(+) (pilH) [Synechococcus elongatus UTEX 3055]
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q79PF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

48.739

95.2

0.464
  vicR Streptococcus mutans UA159

37.097

99.2

0.368