Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   UTEX3055_RS12500 Genome accession   NZ_CP033061
Coordinates   2479412..2480047 (-) Length   211 a.a.
NCBI ID   WP_011378004.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2474412..2485047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS14805 - 2477688..2477858 (+) 171 WP_155813986.1 hypothetical protein -
  UTEX3055_RS12490 corA 2477881..2479044 (+) 1164 WP_238154209.1 magnesium/cobalt transporter CorA -
  UTEX3055_RS12495 - 2479047..2479286 (-) 240 WP_011378005.1 hypothetical protein -
  UTEX3055_RS12500 recR 2479412..2480047 (-) 636 WP_011378004.1 recombination mediator RecR Machinery gene
  UTEX3055_RS12505 - 2480257..2480592 (-) 336 WP_011242501.1 SH3 domain-containing protein -
  UTEX3055_RS12510 - 2480620..2481987 (-) 1368 WP_126148059.1 cytochrome P450 -
  UTEX3055_RS12515 menA 2482046..2482957 (+) 912 WP_126148060.1 2-carboxy-1,4-naphthoquinone phytyltransferase -
  UTEX3055_RS12520 - 2483189..2483887 (+) 699 WP_126148061.1 MarC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23238.97 Da        Isoelectric Point: 7.6446

>NTDB_id=281734 UTEX3055_RS12500 WP_011378004.1 2479412..2480047(-) (recR) [Synechococcus elongatus UTEX 3055]
MGLRSKNCVNAIVSVYTRPLARLIEHLQKLPGVGPKTAQRLALHLIQRPEAEIAAFAEALLAAKQQVGHCQRCFHLSSED
LCNICRDPKRDAQTICVVADPRDVIALEKTREYKGLYHVLGGLISPMDGIGPEQLTVQALVRRVAQEQTQEVIMAISPSV
EGETTTLYVGQLLKPFTRVTRIAFGLPMGGDLEYADEVTLARALEGRRDLT

Nucleotide


Download         Length: 636 bp        

>NTDB_id=281734 UTEX3055_RS12500 WP_011378004.1 2479412..2480047(-) (recR) [Synechococcus elongatus UTEX 3055]
TTGGGTTTACGATCGAAAAATTGCGTCAATGCGATCGTGTCTGTTTATACCCGTCCGCTTGCCCGCCTGATTGAGCACCT
TCAGAAACTGCCAGGTGTTGGCCCCAAAACGGCTCAACGGTTAGCACTGCACCTCATTCAACGACCTGAAGCTGAAATCG
CAGCCTTTGCGGAAGCATTGCTAGCGGCCAAGCAACAAGTGGGGCACTGTCAGCGCTGTTTTCATCTCTCTTCGGAAGAC
CTCTGTAACATCTGCCGAGATCCCAAGCGCGACGCCCAAACCATCTGCGTGGTGGCTGATCCGCGCGACGTGATCGCCCT
TGAGAAAACCCGCGAATATAAGGGGCTCTATCACGTGCTGGGTGGGTTGATTTCGCCCATGGATGGCATCGGTCCTGAGC
AGCTAACGGTGCAGGCGCTGGTACGGCGAGTCGCTCAGGAGCAAACGCAGGAGGTGATTATGGCGATTAGCCCCAGCGTT
GAGGGCGAAACAACGACGCTCTATGTAGGGCAGCTTTTGAAACCCTTCACCCGTGTGACGCGCATTGCCTTTGGTTTACC
GATGGGGGGTGACTTGGAGTACGCCGATGAAGTGACGCTGGCTCGAGCGCTGGAGGGTCGCCGCGATCTGACTTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(53-91)

Toprim domain (Toprim_4)

(94-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

53.571

92.891

0.498
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.761

93.365

0.474
  recR Streptococcus pneumoniae R6

48.223

93.365

0.45