Detailed information
Bioinformatically predicted
Overview
| Name | comA/nlmT | Type | Regulator |
| Locus tag | D9O39_RS05460 | Genome accession | NZ_CP033039 |
| Coordinates | 1105574..1105759 (+) | Length | 61 a.a. |
| NCBI ID | WP_064969529.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer strain WH9 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1100574..1110759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9O39_RS05435 (D9O39_05465) | - | 1100597..1102906 (+) | 2310 | WP_154212728.1 | outer membrane beta-barrel protein | - |
| D9O39_RS05440 (D9O39_05470) | - | 1102990..1103199 (+) | 210 | WP_064969527.1 | hypothetical protein | - |
| D9O39_RS05445 (D9O39_05475) | - | 1103293..1104015 (+) | 723 | WP_154212729.1 | radical SAM protein | - |
| D9O39_RS05450 (D9O39_05480) | - | 1104012..1104890 (-) | 879 | WP_127919822.1 | IS982-like element ISRa1 family transposase | - |
| D9O39_RS05455 (D9O39_05485) | - | 1104946..1105581 (+) | 636 | WP_154212789.1 | SPASM domain-containing protein | - |
| D9O39_RS05460 (D9O39_05490) | comA/nlmT | 1105574..1105759 (+) | 186 | WP_064969529.1 | cysteine peptidase family C39 domain-containing protein | Regulator |
| D9O39_RS05465 (D9O39_05495) | - | 1105815..1106495 (+) | 681 | Protein_1075 | TraM recognition domain-containing protein | - |
| D9O39_RS05470 (D9O39_05500) | - | 1106649..1107455 (+) | 807 | WP_154212790.1 | carboxypeptidase-like regulatory domain-containing protein | - |
| D9O39_RS05475 (D9O39_05505) | - | 1107525..1108403 (+) | 879 | WP_127919822.1 | IS982-like element ISRa1 family transposase | - |
| D9O39_RS05480 (D9O39_05510) | - | 1108405..1109559 (+) | 1155 | WP_154212814.1 | outer membrane beta-barrel family protein | - |
| D9O39_RS05485 (D9O39_05515) | - | 1109646..1110524 (+) | 879 | WP_127919813.1 | IS982-like element ISRa1 family transposase | - |
Sequence
Protein
Download Length: 61 a.a. Molecular weight: 6893.09 Da Isoelectric Point: 9.0592
>NTDB_id=281659 D9O39_RS05460 WP_064969529.1 1105574..1105759(+) (comA/nlmT) [Riemerella anatipestifer strain WH9]
MNKNSFLPQKDQMDCGPACLAMIAKYYGKKYPIEYLRENTFITREGVSLLGISEAAKKIGF
MNKNSFLPQKDQMDCGPACLAMIAKYYGKKYPIEYLRENTFITREGVSLLGISEAAKKIGF
Nucleotide
Download Length: 186 bp
>NTDB_id=281659 D9O39_RS05460 WP_064969529.1 1105574..1105759(+) (comA/nlmT) [Riemerella anatipestifer strain WH9]
TTGAATAAAAATTCTTTCCTCCCCCAAAAAGACCAGATGGACTGTGGTCCAGCTTGCCTTGCAATGATAGCAAAATATTA
CGGCAAGAAATACCCAATAGAATACCTCAGAGAAAATACCTTTATCACCCGTGAAGGTGTTTCGCTTTTGGGTATTAGTG
AAGCTGCCAAAAAGATAGGATTTTGA
TTGAATAAAAATTCTTTCCTCCCCCAAAAAGACCAGATGGACTGTGGTCCAGCTTGCCTTGCAATGATAGCAAAATATTA
CGGCAAGAAATACCCAATAGAATACCTCAGAGAAAATACCTTTATCACCCGTGAAGGTGTTTCGCTTTTGGGTATTAGTG
AAGCTGCCAAAAAGATAGGATTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA/nlmT | Streptococcus mutans UA159 |
55.357 |
91.803 |
0.508 |
| comA | Streptococcus mitis NCTC 12261 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus mitis SK321 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus pneumoniae Rx1 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus pneumoniae D39 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus pneumoniae R6 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus pneumoniae TIGR4 |
47.458 |
96.721 |
0.459 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
38.983 |
96.721 |
0.377 |