Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   C9I78_RS19420 Genome accession   NZ_CP028142
Coordinates   441346..442527 (+) Length   393 a.a.
NCBI ID   WP_025546289.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain R14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 436346..447527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS19405 (C9I78_19400) - 436584..438842 (+) 2259 WP_162597388.1 M9 family metallopeptidase -
  C9I78_RS19410 (C9I78_19405) - 439022..439759 (+) 738 WP_025795864.1 EAL domain-containing protein -
  C9I78_RS19415 (C9I78_19410) ylqF 440048..440992 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  C9I78_RS19420 (C9I78_19415) cqsA 441346..442527 (+) 1182 WP_025546289.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C9I78_RS19425 (C9I78_19420) cqsS 442605..444653 (-) 2049 WP_024701329.1 hybrid sensor histidine kinase/response regulator Regulator
  C9I78_RS19430 (C9I78_19425) - 444973..445590 (+) 618 WP_005486601.1 HAD family phosphatase -
  C9I78_RS19435 (C9I78_19430) - 445676..446224 (-) 549 WP_108745232.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43908.36 Da        Isoelectric Point: 6.4984

>NTDB_id=281658 C9I78_RS19420 WP_025546289.1 441346..442527(+) (cqsA) [Vibrio parahaemolyticus strain R14]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLAMFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARITGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLIQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=281658 C9I78_RS19420 WP_025546289.1 441346..442527(+) (cqsA) [Vibrio parahaemolyticus strain R14]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGTAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGATGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCATCACTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAATACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCAAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.14

98.473

0.573

Multiple sequence alignment