Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D9O39_RS00315 Genome accession   NZ_CP033039
Coordinates   74157..74765 (+) Length   202 a.a.
NCBI ID   WP_064970143.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WH9     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69157..79765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9O39_RS00310 (D9O39_00310) - 72997..73875 (-) 879 WP_010891297.1 IS982-like element ISRa1 family transposase -
  D9O39_RS00315 (D9O39_00315) recR 74157..74765 (+) 609 WP_064970143.1 recombination mediator RecR Machinery gene
  D9O39_RS00320 (D9O39_00320) - 74772..75629 (+) 858 WP_064964795.1 glycosyltransferase family 2 protein -
  D9O39_RS00325 (D9O39_00325) secG 75669..76031 (-) 363 WP_004919074.1 preprotein translocase subunit SecG -
  D9O39_RS00330 (D9O39_00330) - 76174..78216 (-) 2043 WP_154212625.1 pitrilysin family protein -
  D9O39_RS00335 (D9O39_00335) - 78229..79542 (-) 1314 WP_064970145.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22412.70 Da        Isoelectric Point: 4.9891

>NTDB_id=281638 D9O39_RS00315 WP_064970143.1 74157..74765(+) (recR) [Riemerella anatipestifer strain WH9]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGIALGDAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLETGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=281638 D9O39_RS00315 WP_064970143.1 74157..74765(+) (recR) [Riemerella anatipestifer strain WH9]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAGGCAGTAGAAGAAATATCGGGACTTCCAGGTATAGGCAGAAAGTCGGCTCT
CAGACTAGCACTTCATTTGCTTAGACAACCGAGTTCGCAAGGAATAGCTCTAGGCGATGCTATACAAAATCTAGTTACAG
AGATAAAATACTGTAAAGAATGTCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAATACAGGGAAATTCAAGGGGAAATATTTGGT
TTTAGGAGGGAAAATATCACCTATGGAAGGCATTGGTCCTCAACAATTAAATATAGAAACACTAGAAAGCAAACTAGAAA
CAGGAGAGATAGAGGAGGTGATTTTTGCCCTGTCTGCCACTATGGAAGGCGACACCACCGTATATTATTTATATAAAAAG
TTTAAACATTTTGATATAAAATTCTCCAATATTGCGAGAGGTATTTCCGTAGGAGATGAGCTAGAGTATGCCGATGAAGT
TTCTTTAGGAAGGTCTATTTTAAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-78)

Toprim domain (Toprim_4)

(83-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

40.306

97.03

0.391
  recR Bacillus subtilis subsp. subtilis str. 168

38.776

97.03

0.376