Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   At12D1_RS13975 Genome accession   NZ_CP033031
Coordinates   2808512..2809117 (-) Length   201 a.a.
NCBI ID   WP_080865684.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 12D1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2803512..2814117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At12D1_RS13960 (At12D1_26690) rimP 2804530..2805126 (-) 597 WP_003507173.1 ribosome maturation factor RimP -
  At12D1_RS13965 (At12D1_26700) - 2805414..2807042 (+) 1629 WP_060722713.1 MFS transporter -
  At12D1_RS13970 (At12D1_26710) - 2807208..2808473 (-) 1266 WP_080865683.1 lytic murein transglycosylase -
  At12D1_RS13975 (At12D1_26720) recR 2808512..2809117 (-) 606 WP_080865684.1 recombination mediator RecR Machinery gene
  At12D1_RS13980 (At12D1_26730) - 2809155..2809790 (+) 636 WP_003507178.1 MOSC domain-containing protein -
  At12D1_RS13985 (At12D1_26740) - 2809857..2810180 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  At12D1_RS13990 (At12D1_26750) - 2810205..2812082 (-) 1878 WP_003507182.1 DNA polymerase III subunit gamma/tau -
  At12D1_RS14000 (At12D1_26760) - 2812324..2812752 (+) 429 WP_162690801.1 HIT domain-containing protein -
  At12D1_RS14005 (At12D1_26770) nudC 2812752..2813714 (+) 963 WP_003507186.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21429.74 Da        Isoelectric Point: 6.3321

>NTDB_id=281636 At12D1_RS13975 WP_080865684.1 2808512..2809117(-) (recR) [Agrobacterium tumefaciens strain 12D1]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRSRTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281636 At12D1_RS13975 WP_080865684.1 2808512..2809117(-) (recR) [Agrobacterium tumefaciens strain 12D1]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTCATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCAGCGTTGCATCTCATCAAGAAGAAGGAGCAACTTCTCGGACCGCTAGGCCATGCCATGGGCGAGGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACCATCGATCCCTGCACCGTCTGCGCTGACGACCGGCGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTCTGGGCGCTGGAGCGGACGGGCGCGATGAACACCGCCTA
CCACGTTCTCGGCGGCACGCTTTCGCCACTCGATGGCGTCGGGCCGGAGGACCTAAATATCAAGGGCCTGATCGACCGTG
TCAGCGCGGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACCGCCCATTACATCACC
GACCGCCTCTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
CGAGGGCACATTGACGGCGGCGCTTCGGTCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368

Multiple sequence alignment