Detailed information NTG0281632

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C9I78_RS02595
• Genome accession: NZ_CP028141
• Coordinates: 503997..504866 (-)
• Length: 289 a.a.
• NCBI ID: WP_057619578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain R14
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 498997..509866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9I78_RS02560 (C9I78_02560)	rpsP	500038..500286 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
C9I78_RS02565 (C9I78_02565)	rimM	500315..500863 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
C9I78_RS02570 (C9I78_02570)	trmD	500891..501634 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C9I78_RS02575 (C9I78_02575)	rplS	501676..502029 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
C9I78_RS02580 (C9I78_02580)	yacG	502351..502545 (-)	195	WP_031845920.1	DNA gyrase inhibitor YacG	-
C9I78_RS02585 (C9I78_02585)	zapD	502614..503354 (-)	741	WP_015297254.1	cell division protein ZapD	-
C9I78_RS02590 (C9I78_02590)	coaE	503382..503996 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
C9I78_RS02595 (C9I78_02595)	pilD	503997..504866 (-)	870	WP_057619578.1	A24 family peptidase	Machinery gene
C9I78_RS02600 (C9I78_02600)	pilC	504931..506154 (-)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
C9I78_RS02605 (C9I78_02605)	pilB	506179..507864 (-)	1686	WP_057619577.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C9I78_RS02610 (C9I78_02610)	-	507870..508328 (-)	459	WP_025547614.1	pilin	-
C9I78_RS02615 (C9I78_02615)	nadC	508592..509479 (-)	888	WP_025547616.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32421.44 Da
• Isoelectric Point: 6.4652

>NTDB_id=281632 C9I78_RS02595 WP_057619578.1 503997..504866(-) (pilD) [Vibrio parahaemolyticus strain R14]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSEPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSIVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=281632 C9I78_RS02595 WP_057619578.1 503997..504866(-) (pilD) [Vibrio parahaemolyticus strain R14]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGAGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCATCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446