Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AtA6_RS12915 Genome accession   NZ_CP033027
Coordinates   2616593..2617198 (-) Length   201 a.a.
NCBI ID   WP_003514308.1    Uniprot ID   A0A1V2AN75
Organism   Agrobacterium tumefaciens strain A6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2611593..2622198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AtA6_RS12895 (AtA6_24960) rimP 2612155..2612751 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  AtA6_RS12900 (AtA6_24970) - 2613039..2614667 (+) 1629 WP_075807519.1 MFS transporter -
  AtA6_RS12905 (AtA6_24980) - 2614754..2615215 (+) 462 WP_038489340.1 GNAT family N-acetyltransferase -
  AtA6_RS12910 (AtA6_24990) - 2615231..2616469 (-) 1239 WP_046205576.1 lytic murein transglycosylase -
  AtA6_RS12915 (AtA6_25000) recR 2616593..2617198 (-) 606 WP_003514308.1 recombination mediator RecR Machinery gene
  AtA6_RS12920 (AtA6_25010) - 2617236..2617871 (+) 636 WP_038489346.1 MOSC domain-containing protein -
  AtA6_RS12925 (AtA6_25020) - 2617885..2618208 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  AtA6_RS12930 (AtA6_25030) - 2618236..2620113 (-) 1878 WP_038489348.1 DNA polymerase III subunit gamma/tau -
  AtA6_RS12940 (AtA6_25040) - 2620438..2620866 (+) 429 WP_161986907.1 HIT domain-containing protein -
  AtA6_RS12945 (AtA6_25050) nudC 2620866..2621828 (+) 963 WP_003514323.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21367.72 Da        Isoelectric Point: 6.3321

>NTDB_id=281599 AtA6_RS12915 WP_003514308.1 2616593..2617198(-) (recR) [Agrobacterium tumefaciens strain A6]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281599 AtA6_RS12915 WP_003514308.1 2616593..2617198(-) (recR) [Agrobacterium tumefaciens strain A6]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCAATGAATACCGCATA
TCATGTGCTTGGTGGCACGCTATCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GACCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
CGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2AN75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373

Multiple sequence alignment