Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | C4X49_RS08480 | Genome accession | NZ_CP028138 |
| Coordinates | 1709847..1710227 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NCIMB 8209 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1704847..1715227
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4X49_RS08450 (C4X49_08450) | kdsB | 1705750..1706511 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| C4X49_RS08455 (C4X49_08455) | - | 1706523..1707503 (+) | 981 | WP_130089766.1 | DNA polymerase III subunit delta' | - |
| C4X49_RS08460 (C4X49_08460) | - | 1707515..1707856 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| C4X49_RS08465 (C4X49_08465) | - | 1707874..1708647 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| C4X49_RS08470 (C4X49_08470) | - | 1708685..1709293 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| C4X49_RS08475 (C4X49_08475) | - | 1709303..1709857 (+) | 555 | WP_002057406.1 | type II secretion system protein | - |
| C4X49_RS08480 (C4X49_08480) | xcpV | 1709847..1710227 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| C4X49_RS08485 (C4X49_08485) | xcpW | 1710227..1710928 (+) | 702 | WP_000594581.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| C4X49_RS08490 (C4X49_08490) | gspK | 1710928..1711887 (+) | 960 | WP_005139244.1 | type II secretion system minor pseudopilin GspK | - |
| C4X49_RS08495 (C4X49_08495) | - | 1712117..1712713 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| C4X49_RS08500 (C4X49_08500) | ung | 1712764..1713477 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| C4X49_RS08505 (C4X49_08505) | - | 1713474..1714598 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| C4X49_RS08510 (C4X49_08510) | tadA | 1714605..1715108 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=281537 C4X49_RS08480 WP_000836911.1 1709847..1710227(+) (xcpV) [Acinetobacter baumannii strain NCIMB 8209]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=281537 C4X49_RS08480 WP_000836911.1 1709847..1710227(+) (xcpV) [Acinetobacter baumannii strain NCIMB 8209]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |