Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   D9Q99_RS09065 Genome accession   NZ_CP033020
Coordinates   1920507..1921163 (+) Length   218 a.a.
NCBI ID   WP_000611329.1    Uniprot ID   -
Organism   Escherichia coli ATCC 8739     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915507..1926163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Q99_RS09035 (D9Q99_09130) dcyD 1916386..1917372 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  D9Q99_RS09040 (D9Q99_09135) tcyL 1917387..1918055 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  D9Q99_RS09045 (D9Q99_09140) tcyN 1918052..1918804 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  D9Q99_RS09050 (D9Q99_09145) sdiA 1919034..1919756 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  D9Q99_RS09055 (D9Q99_09150) yecF 1919824..1920048 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  D9Q99_RS09060 (D9Q99_09155) yecU 1920035..1920211 (-) 177 WP_000590344.1 protein YecU -
  D9Q99_RS22760 (D9Q99_09160) - 1920249..1920365 (-) 117 WP_001302039.1 hypothetical protein -
  D9Q99_RS09065 (D9Q99_09165) letA 1920507..1921163 (+) 657 WP_000611329.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  D9Q99_RS09070 (D9Q99_09170) uvrC 1921160..1922992 (+) 1833 WP_001283424.1 excinuclease ABC subunit UvrC Machinery gene
  D9Q99_RS09075 (D9Q99_09175) pgsA 1923049..1923597 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D9Q99_RS09095 (D9Q99_09195) yecA 1924246..1924911 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=281520 D9Q99_RS09065 WP_000611329.1 1920507..1921163(+) (letA) [Escherichia coli ATCC 8739]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKSAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=281520 D9Q99_RS09065 WP_000611329.1 1920507..1921163(+) (letA) [Escherichia coli ATCC 8739]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAAGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482