Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D9V54_RS05555 Genome accession   NZ_CP032992
Coordinates   1113310..1114047 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain W5-6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1108310..1119047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V54_RS05520 yfiL 1108468..1108833 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  D9V54_RS05525 aroF 1109043..1110113 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  D9V54_RS05530 tyrA 1110124..1111245 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D9V54_RS05535 pheA 1111288..1112448 (-) 1161 WP_023281432.1 bifunctional chorismate mutase/prephenate dehydratase -
  D9V54_RS05540 pheL 1112547..1112594 (-) 48 WP_010723158.1 phe operon leader peptide -
  D9V54_RS05545 raiA 1112698..1113039 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D9V54_RS05555 comL 1113310..1114047 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  D9V54_RS05560 rluD 1114182..1115162 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D9V54_RS05565 yfiH 1115159..1115890 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  D9V54_RS05570 clpC 1116020..1118593 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=281429 D9V54_RS05555 WP_000197686.1 1113310..1114047(-) (comL) [Escherichia coli strain W5-6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=281429 D9V54_RS05555 WP_000197686.1 1113310..1114047(-) (comL) [Escherichia coli strain W5-6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment