Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   At1D1108_RS12640 Genome accession   NZ_CP032921
Coordinates   2584076..2584681 (-) Length   201 a.a.
NCBI ID   WP_003514308.1    Uniprot ID   A0A1V2AN75
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2579076..2589681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS12625 (At1D1108_24420) rimP 2580111..2580707 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  At1D1108_RS12630 (At1D1108_24430) - 2580995..2582623 (+) 1629 WP_121556882.1 MFS transporter -
  At1D1108_RS12635 (At1D1108_24440) - 2582714..2583952 (-) 1239 WP_419459205.1 lytic murein transglycosylase -
  At1D1108_RS12640 (At1D1108_24450) recR 2584076..2584681 (-) 606 WP_003514308.1 recombination mediator RecR Machinery gene
  At1D1108_RS12645 (At1D1108_24460) - 2584719..2585354 (+) 636 WP_162995222.1 MOSC domain-containing protein -
  At1D1108_RS12650 (At1D1108_24470) - 2585368..2585691 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  At1D1108_RS12655 (At1D1108_24480) - 2585719..2587596 (-) 1878 WP_111795096.1 DNA polymerase III subunit gamma/tau -
  At1D1108_RS12665 (At1D1108_24490) - 2587921..2588349 (+) 429 WP_161986907.1 HIT domain-containing protein -
  At1D1108_RS12670 (At1D1108_24500) nudC 2588349..2589311 (+) 963 WP_080799892.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21367.72 Da        Isoelectric Point: 6.3321

>NTDB_id=281205 At1D1108_RS12640 WP_003514308.1 2584076..2584681(-) (recR) [Agrobacterium tumefaciens strain 1D1108]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281205 At1D1108_RS12640 WP_003514308.1 2584076..2584681(-) (recR) [Agrobacterium tumefaciens strain 1D1108]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGCCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCTTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCAATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATAAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GACCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGTTGGACTATCTCGA
CGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2AN75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373