Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C1N55_RS20285 Genome accession   NZ_CP028083
Coordinates   4124997..4125569 (-) Length   190 a.a.
NCBI ID   WP_137730457.1    Uniprot ID   A0A4P8SC83
Organism   Lysinibacillus sp. SGAir0095     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4119997..4130569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS20265 (C1N55_20305) - 4119997..4121970 (-) 1974 WP_137730454.1 DHH family phosphoesterase -
  C1N55_RS20270 (C1N55_20310) - 4121983..4122924 (-) 942 WP_137730455.1 YybS family protein -
  C1N55_RS20275 (C1N55_20315) - 4123376..4124605 (+) 1230 WP_137730456.1 hemolysin family protein -
  C1N55_RS20280 (C1N55_20320) rpsR 4124671..4124907 (-) 237 WP_036172223.1 30S ribosomal protein S18 -
  C1N55_RS20285 (C1N55_20325) ssbA 4124997..4125569 (-) 573 WP_137730457.1 single-stranded DNA-binding protein Machinery gene
  C1N55_RS20290 (C1N55_20330) rpsF 4125617..4125904 (-) 288 WP_137730458.1 30S ribosomal protein S6 -
  C1N55_RS20295 (C1N55_20335) - 4126152..4126715 (+) 564 WP_137730459.1 DUF3267 domain-containing protein -
  C1N55_RS20300 (C1N55_20340) - 4126708..4127268 (+) 561 WP_137730460.1 metalloprotease family protein -
  C1N55_RS20305 (C1N55_20345) ychF 4127301..4128401 (-) 1101 WP_137730461.1 redox-regulated ATPase YchF -
  C1N55_RS20310 (C1N55_20350) - 4128536..4128736 (-) 201 WP_137730462.1 DUF951 domain-containing protein -
  C1N55_RS20315 (C1N55_20355) - 4128736..4129656 (-) 921 WP_137730463.1 mechanosensitive ion channel family protein -
  C1N55_RS20320 (C1N55_20360) yyaC 4129772..4130404 (+) 633 WP_137730464.1 spore protease YyaC -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20913.04 Da        Isoelectric Point: 4.6419

>NTDB_id=281171 C1N55_RS20285 WP_137730457.1 4124997..4125569(-) (ssbA) [Lysinibacillus sp. SGAir0095]
MINRVVLVGRLTKDPELRYTPSGVPMTRFTVAVNRTFSNQQGEREADFIGCIAWRKQAENLANFMKKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADAVQFLEPRNTGGGGMPNQQYGGQPQYGGNQPSYGTSQPNQQFGGGNMDQDPFAPSYQQSQPS
MNQQNYTRVDEDPFASSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=281171 C1N55_RS20285 WP_137730457.1 4124997..4125569(-) (ssbA) [Lysinibacillus sp. SGAir0095]
GTGATAAACCGTGTCGTACTAGTTGGAAGACTTACGAAAGATCCTGAGCTTCGATATACACCGAGTGGCGTTCCTATGAC
TCGTTTTACAGTCGCTGTAAATAGAACATTTTCGAACCAACAAGGTGAACGTGAAGCAGACTTCATCGGATGTATTGCTT
GGAGAAAACAAGCCGAAAACTTGGCAAACTTCATGAAAAAAGGAAGTTTGATTGGTGTAGAAGGCCGTATTCAAACAGGT
AGTTTTGAGGGTCAAGATGGAAAACGTGTTTATACAACAGATGTTGTAGCGGATGCTGTTCAATTCTTAGAACCACGCAA
CACTGGTGGTGGAGGAATGCCAAATCAACAGTATGGAGGGCAACCACAATATGGAGGCAACCAACCTTCATATGGTACAA
GCCAACCAAACCAACAATTTGGTGGTGGCAATATGGATCAAGATCCATTTGCTCCTTCTTACCAACAATCTCAACCTTCT
ATGAATCAGCAAAATTATACACGTGTAGATGAGGATCCATTTGCATCGAGCAAAGGACCAATCGAAGTTTCTGAAGATGA
CTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8SC83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.282

100

0.526
  ssb Latilactobacillus sakei subsp. sakei 23K

47.396

100

0.479

Multiple sequence alignment