Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | C7S18_RS14360 | Genome accession | NZ_CP027860 |
| Coordinates | 3706062..3706325 (+) | Length | 87 a.a. |
| NCBI ID | WP_240623903.1 | Uniprot ID | - |
| Organism | Ahniella affigens strain D13 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3701062..3711325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7S18_RS14320 (C7S18_14310) | - | 3701114..3701527 (+) | 414 | WP_106892213.1 | DUF4440 domain-containing protein | - |
| C7S18_RS14325 (C7S18_14315) | maiA | 3701705..3702367 (+) | 663 | WP_106892214.1 | maleylacetoacetate isomerase | - |
| C7S18_RS14330 (C7S18_14320) | - | 3702484..3703251 (+) | 768 | WP_106892215.1 | TSUP family transporter | - |
| C7S18_RS14340 (C7S18_14330) | - | 3703946..3705103 (-) | 1158 | WP_106892217.1 | AAA family ATPase | - |
| C7S18_RS14350 (C7S18_14340) | - | 3705461..3705742 (+) | 282 | WP_106892219.1 | protein kinase | - |
| C7S18_RS24530 (C7S18_14345) | - | 3705773..3705931 (+) | 159 | WP_170113275.1 | hypothetical protein | - |
| C7S18_RS14360 (C7S18_14350) | comE | 3706062..3706325 (+) | 264 | WP_240623903.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| C7S18_RS14370 (C7S18_14360) | lpdA | 3706839..3708641 (-) | 1803 | WP_106892223.1 | dihydrolipoyl dehydrogenase | - |
| C7S18_RS14375 (C7S18_14365) | aceF | 3708654..3709982 (-) | 1329 | WP_240623904.1 | dihydrolipoyllysine-residue acetyltransferase | - |
| C7S18_RS14380 (C7S18_14370) | - | 3710317..3710913 (+) | 597 | WP_106892225.1 | ECF-type sigma factor | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9106.58 Da Isoelectric Point: 10.0994
>NTDB_id=281044 C7S18_RS14360 WP_240623903.1 3706062..3706325(+) (comE) [Ahniella affigens strain D13]
MNLLKTALFAALIGLSNLALAAININTASTTELETLNGVGAAKAKAIVEYREKHGPFKSVDQLAEVKGIGEKLVEKNRAN
LTTAAGK
MNLLKTALFAALIGLSNLALAAININTASTTELETLNGVGAAKAKAIVEYREKHGPFKSVDQLAEVKGIGEKLVEKNRAN
LTTAAGK
Nucleotide
Download Length: 264 bp
>NTDB_id=281044 C7S18_RS14360 WP_240623903.1 3706062..3706325(+) (comE) [Ahniella affigens strain D13]
ATGAATCTGCTCAAGACCGCTCTGTTCGCCGCCCTCATTGGCCTGTCCAACCTGGCGCTGGCGGCGATCAACATCAATAC
TGCCAGCACCACCGAATTGGAGACGCTGAATGGCGTCGGTGCCGCCAAGGCCAAGGCCATTGTCGAATACCGCGAGAAGC
ACGGTCCGTTCAAGTCGGTGGATCAGCTCGCCGAAGTCAAAGGCATCGGCGAGAAACTCGTCGAGAAGAACCGCGCGAAT
CTGACGACCGCGGCTGGCAAGTAA
ATGAATCTGCTCAAGACCGCTCTGTTCGCCGCCCTCATTGGCCTGTCCAACCTGGCGCTGGCGGCGATCAACATCAATAC
TGCCAGCACCACCGAATTGGAGACGCTGAATGGCGTCGGTGCCGCCAAGGCCAAGGCCATTGTCGAATACCGCGAGAAGC
ACGGTCCGTTCAAGTCGGTGGATCAGCTCGCCGAAGTCAAAGGCATCGGCGAGAAACTCGTCGAGAAGAACCGCGCGAAT
CTGACGACCGCGGCTGGCAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
51.22 |
94.253 |
0.483 |
| comE | Neisseria gonorrhoeae MS11 |
51.22 |
94.253 |
0.483 |
| comE | Neisseria gonorrhoeae MS11 |
51.22 |
94.253 |
0.483 |
| comE | Neisseria gonorrhoeae MS11 |
51.22 |
94.253 |
0.483 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50.633 |
90.805 |
0.46 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
41.304 |
100 |
0.437 |
| comEA | Acinetobacter baylyi ADP1 |
59.322 |
67.816 |
0.402 |
| comEA | Vibrio cholerae C6706 |
56.667 |
68.966 |
0.391 |
| comEA | Vibrio cholerae strain A1552 |
56.667 |
68.966 |
0.391 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.649 |
65.517 |
0.391 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
57.895 |
65.517 |
0.379 |
| comEA | Legionella pneumophila str. Paris |
49.231 |
74.713 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
49.231 |
74.713 |
0.368 |