Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4H43_RS07120 Genome accession   NZ_CP032911
Coordinates   1464094..1464552 (+) Length   152 a.a.
NCBI ID   WP_164859204.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459094..1469552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS07100 dnaK 1459184..1461046 (+) 1863 WP_139544477.1 molecular chaperone DnaK -
  D4H43_RS07105 - 1461283..1461862 (-) 580 Protein_1366 hypothetical protein -
  D4H43_RS07110 - 1461976..1462893 (+) 918 WP_201737094.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4H43_RS07115 - 1462914..1464056 (+) 1143 WP_139544480.1 cystathionine gamma-synthase -
  D4H43_RS07120 luxS 1464094..1464552 (+) 459 WP_164859204.1 S-ribosylhomocysteine lyase Regulator
  D4H43_RS07125 - 1464693..1466438 (+) 1746 WP_139544481.1 5'-nucleotidase C-terminal domain-containing protein -
  D4H43_RS07130 tlpB 1466647..1468344 (+) 1698 WP_139548834.1 methyl-accepting chemotaxis protein TlpB -
  D4H43_RS07135 - 1468376..1469155 (+) 780 WP_139544483.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17271.62 Da        Isoelectric Point: 6.6035

>NTDB_id=281040 D4H43_RS07120 WP_164859204.1 1464094..1464552(+) (luxS) [Helicobacter pylori strain 19-A-EK3]
MKMNVESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=281040 D4H43_RS07120 WP_164859204.1 1464094..1464552(+) (luxS) [Helicobacter pylori strain 19-A-EK3]
ATGAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGTGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACATGCCTAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCAC
AAAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

92.763

0.395

Multiple sequence alignment