Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C7R88_RS08760 Genome accession   NZ_CP027852
Coordinates   1975416..1976252 (+) Length   278 a.a.
NCBI ID   WP_230425799.1    Uniprot ID   -
Organism   Plesiomonas shigelloides strain MS-17-188     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970416..1981252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R88_RS08745 (C7R88_08735) - 1971925..1973160 (+) 1236 WP_106911398.1 type II secretion system F family protein -
  C7R88_RS08750 (C7R88_08740) - 1973317..1973871 (-) 555 WP_106911399.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  C7R88_RS08755 (C7R88_08745) - 1974088..1975128 (-) 1041 WP_010862605.1 GMP reductase -
  C7R88_RS08760 (C7R88_08750) pilD 1975416..1976252 (+) 837 WP_230425799.1 prepilin peptidase Machinery gene
  C7R88_RS08765 (C7R88_08755) coaE 1976254..1976862 (+) 609 WP_106911400.1 dephospho-CoA kinase -
  C7R88_RS08775 (C7R88_08765) zapD 1977359..1978111 (+) 753 WP_064977165.1 cell division protein ZapD -
  C7R88_RS08785 (C7R88_08775) yacG 1978296..1978487 (+) 192 WP_039046505.1 DNA gyrase inhibitor YacG -
  C7R88_RS08790 (C7R88_08780) mutT 1978568..1979002 (-) 435 WP_106911403.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30903.79 Da        Isoelectric Point: 7.3251

>NTDB_id=280947 C7R88_RS08760 WP_230425799.1 1975416..1976252(+) (pilD) [Plesiomonas shigelloides strain MS-17-188]
MDGTLLIAFAALFGLLIGSFLNVVIYRYPLMLERRWHLECAEQFPELTPPAEAPRFDLILPSSHCPHCQHPVRWFDNLPV
LSWLVLRGRCRHCQAPISKRYPAIELLTALVFALPVALWGLQIWSVACALFGAVLITASMIDLDRMWLPDSLTQPLLWAG
LLLAWGGYSPLSLHDAVLGAAVGYLSLWSLFWMFKLLTGKEGMGRGDFVLMAALCAWSGPTQLLLIALLASVCGLVYAVI
ARKTQQAIPFGPWLALGGWISLLFSDTIYAHYFALMGY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=280947 C7R88_RS08760 WP_230425799.1 1975416..1976252(+) (pilD) [Plesiomonas shigelloides strain MS-17-188]
TTGGACGGAACCCTGCTCATTGCCTTTGCGGCGCTCTTTGGCTTGCTGATCGGCAGCTTTCTCAATGTCGTGATCTACCG
CTATCCACTGATGTTGGAGCGGCGCTGGCACCTTGAATGTGCCGAACAATTCCCCGAACTCACTCCACCAGCCGAAGCAC
CGCGCTTTGACTTGATCCTGCCCAGCTCTCACTGCCCACACTGCCAACATCCGGTGCGCTGGTTTGATAACCTGCCCGTG
TTGTCGTGGTTGGTGCTGCGCGGTCGTTGCCGTCATTGTCAGGCTCCGATCAGTAAACGCTATCCGGCCATCGAACTGCT
CACCGCACTGGTTTTTGCTCTGCCTGTCGCGCTGTGGGGGTTACAGATTTGGAGCGTCGCATGCGCGCTGTTTGGTGCGG
TGCTGATCACCGCCAGCATGATTGACTTAGATAGAATGTGGTTGCCCGACAGCCTCACCCAACCGCTGTTATGGGCCGGT
TTATTACTGGCATGGGGCGGTTACTCGCCGTTATCCCTGCATGATGCGGTATTGGGCGCTGCGGTGGGCTATTTGAGCCT
GTGGAGCCTGTTTTGGATGTTCAAATTGCTGACCGGCAAAGAAGGCATGGGACGCGGTGATTTTGTCTTGATGGCCGCAC
TCTGCGCTTGGAGTGGCCCGACCCAACTGCTGCTGATTGCCCTGCTCGCCTCGGTGTGTGGGCTGGTGTATGCCGTAATT
GCGCGTAAGACGCAACAGGCAATCCCATTTGGCCCGTGGCTAGCCTTGGGTGGCTGGATCAGCCTGCTGTTTAGTGACAC
CATATACGCTCACTATTTTGCACTGATGGGATATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-115)

Type IV leader peptidase family (Peptidase_A24)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.515

97.842

0.543
  pilD Vibrio campbellii strain DS40M4

51.625

99.64

0.514
  pilD Acinetobacter baumannii D1279779

45.818

98.921

0.453
  pilD Acinetobacter nosocomialis M2

44.727

98.921

0.442
  pilD Neisseria gonorrhoeae MS11

44.906

95.324

0.428

Multiple sequence alignment