Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   C7J88_RS04485 Genome accession   NZ_CP027848
Coordinates   904137..904853 (+) Length   238 a.a.
NCBI ID   WP_095117455.1    Uniprot ID   A0A240C5L4
Organism   Staphylococcus muscae strain ATCC 49910     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 899137..909853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J88_RS04455 (C7J88_04440) - 899385..900377 (-) 993 WP_095117451.1 SdrH family protein -
  C7J88_RS04460 (C7J88_04445) - 900640..901437 (+) 798 WP_095117452.1 carbon-nitrogen family hydrolase -
  C7J88_RS04470 (C7J88_04450) - 902085..902651 (+) 567 WP_095117453.1 accessory gene regulator AgrB -
  C7J88_RS04475 (C7J88_04455) - 902651..902791 (+) 141 WP_229709407.1 cyclic lactone autoinducer peptide -
  C7J88_RS04480 (C7J88_04460) - 903231..904124 (+) 894 WP_249027484.1 GHKL domain-containing protein -
  C7J88_RS04485 (C7J88_04465) agrA 904137..904853 (+) 717 WP_095117455.1 LytTR family DNA-binding domain-containing protein Regulator
  C7J88_RS04490 (C7J88_04470) - 904906..905853 (-) 948 WP_095117456.1 carbohydrate kinase -
  C7J88_RS04495 (C7J88_04475) - 905846..907339 (-) 1494 WP_095117457.1 sucrose-6-phosphate hydrolase -
  C7J88_RS04500 (C7J88_04480) - 907354..908337 (-) 984 WP_095117458.1 LacI family DNA-binding transcriptional regulator -
  C7J88_RS04505 (C7J88_04485) - 908524..908748 (-) 225 WP_095117459.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27711.52 Da        Isoelectric Point: 5.6230

>NTDB_id=280918 C7J88_RS04485 WP_095117455.1 904137..904853(+) (agrA) [Staphylococcus muscae strain ATCC 49910]
MKIFICEDDPKQRARMENIINTYIMIEEKPMEIALSTDNPYELIEASKTSSDVGCYFLDIQLESDINGIKVGSEIRQHDP
IGNIVYVTSHSELTYLTFVYKVAAMDFIFKDDPDQLQKRVIDCLETALNRLNLLTKEETVETLELKRGSGSEYVNYDEVM
FFESSPKSHRVIAHLDNRQVEFYGKLKELSQVDSRFFRCHNSFVLNRHNIANVEPKERTVHFKNGEHCYVSVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=280918 C7J88_RS04485 WP_095117455.1 904137..904853(+) (agrA) [Staphylococcus muscae strain ATCC 49910]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAGCGTGCACGCATGGAAAATATCATCAACACATACATTATGATTGA
AGAAAAACCCATGGAAATTGCACTGTCAACGGACAATCCCTACGAACTGATAGAAGCCTCCAAAACGTCATCAGATGTTG
GCTGTTACTTTTTGGATATTCAATTAGAATCAGATATTAACGGTATAAAAGTCGGCAGTGAGATTCGACAACATGATCCA
ATTGGCAATATCGTTTATGTCACGAGTCACAGCGAACTCACCTATTTAACATTTGTATACAAAGTTGCTGCAATGGACTT
TATATTCAAAGATGACCCTGATCAACTTCAAAAACGAGTCATCGATTGTTTGGAAACAGCACTTAATCGCTTGAATTTGC
TAACTAAAGAAGAGACAGTAGAAACATTAGAATTAAAACGTGGGAGTGGTTCGGAATACGTCAACTATGATGAGGTGATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTGTCATCGCACATTTAGACAATCGCCAAGTTGAATTTTATGGTAAATTAAA
AGAACTATCACAAGTCGACTCACGATTCTTCCGCTGTCATAACAGCTTCGTCCTTAACCGACATAACATCGCCAATGTCG
AGCCTAAAGAGAGAACTGTTCACTTCAAAAATGGTGAACATTGTTATGTCTCTGTGCGCAATATTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240C5L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

76.05

100

0.761
  comE/comE1 Streptococcus equinus JB1

34.4

100

0.361

Multiple sequence alignment