Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C7J88_RS02300 Genome accession   NZ_CP027848
Coordinates   484271..484591 (+) Length   106 a.a.
NCBI ID   WP_095116807.1    Uniprot ID   -
Organism   Staphylococcus muscae strain ATCC 49910     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479271..489591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J88_RS02270 (C7J88_02265) - 480033..480236 (+) 204 WP_095116793.1 YqgQ family protein -
  C7J88_RS02275 (C7J88_02270) - 480233..481213 (+) 981 WP_095116795.1 ROK family glucokinase -
  C7J88_RS02280 (C7J88_02275) - 481220..481531 (+) 312 WP_095116797.1 MTH1187 family thiamine-binding protein -
  C7J88_RS02285 (C7J88_02280) - 481559..482182 (+) 624 WP_095116800.1 MBL fold metallo-hydrolase -
  C7J88_RS02290 (C7J88_02285) comGA 482249..483223 (+) 975 WP_095116803.1 competence type IV pilus ATPase ComGA Machinery gene
  C7J88_RS02295 (C7J88_02290) comGB 483192..484259 (+) 1068 WP_095116805.1 competence type IV pilus assembly protein ComGB -
  C7J88_RS02300 (C7J88_02295) comGC 484271..484591 (+) 321 WP_095116807.1 competence type IV pilus major pilin ComGC Machinery gene
  C7J88_RS02305 (C7J88_02300) comGD 484581..485012 (+) 432 WP_157728687.1 competence type IV pilus minor pilin ComGD -
  C7J88_RS10625 (C7J88_02310) - 485199..485693 (+) 495 WP_095116813.1 competence type IV pilus minor pilin ComGF -
  C7J88_RS02325 (C7J88_02320) - 485859..486383 (+) 525 WP_095116816.1 shikimate kinase -
  C7J88_RS02330 (C7J88_02325) gcvT 486543..487634 (+) 1092 WP_095116818.1 glycine cleavage system aminomethyltransferase GcvT -
  C7J88_RS02335 (C7J88_02330) gcvPA 487647..488996 (+) 1350 WP_095116819.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11983.15 Da        Isoelectric Point: 9.5852

>NTDB_id=280910 C7J88_RS02300 WP_095116807.1 484271..484591(+) (comGC) [Staphylococcus muscae strain ATCC 49910]
MKKLFLTLKQNKAFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCKAQTRLVDSQIEAYTLKFNHKPNSIDDLVRE
GYIKENQKTCKSGETIRIQDGEAVAS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=280910 C7J88_RS02300 WP_095116807.1 484271..484591(+) (comGC) [Staphylococcus muscae strain ATCC 49910]
ATGAAAAAATTATTTTTAACATTGAAACAAAACAAAGCTTTTACACTAATTGAAATGTTACTTGTCCTTTTAATCATTAG
TGTATTGCTTATCTTAATTATCCCCAATATCGCAAAACAATCTGATCATATTCAAAAGACTGGGTGTAAAGCACAAACTC
GACTTGTTGACAGTCAGATTGAAGCTTATACATTAAAATTTAACCATAAACCAAATTCAATTGATGATCTTGTGAGAGAA
GGATACATCAAAGAGAATCAAAAAACATGTAAATCTGGTGAAACAATCCGAATTCAAGATGGTGAGGCTGTTGCATCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

70.874

97.17

0.689
  comGC Staphylococcus aureus N315

70.874

97.17

0.689
  comGC/cglC Streptococcus mitis SK321

47.191

83.962

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

47.191

83.962

0.396
  comGC/cglC Streptococcus pneumoniae D39

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae R6

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae TIGR4

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae Rx1

46.067

83.962

0.387
  comGC Lactococcus lactis subsp. cremoris KW2

46.512

81.132

0.377
  comGC Bacillus subtilis subsp. subtilis str. 168

43.956

85.849

0.377

Multiple sequence alignment