Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4I31_RS03335 Genome accession   NZ_CP032908
Coordinates   688343..688627 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683343..693627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS03310 - 683983..685116 (-) 1134 WP_139534471.1 VirB8/TrbF family protein -
  D4I31_RS03315 - 685109..685243 (-) 135 WP_000738749.1 hypothetical protein -
  D4I31_RS03320 comB4 685240..687822 (-) 2583 WP_139534473.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4I31_RS03325 - 687822..688058 (-) 237 WP_139534474.1 hypothetical protein -
  D4I31_RS03330 comB3 688069..688332 (-) 264 WP_139534476.1 competence protein ComB Machinery gene
  D4I31_RS03335 comB2 688343..688627 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  D4I31_RS03340 - 688624..689103 (-) 480 WP_139534478.1 hypothetical protein -
  D4I31_RS03345 - 689207..689995 (-) 789 WP_139534480.1 integrase -
  D4I31_RS03350 - 690069..690488 (+) 420 WP_236635762.1 hypothetical protein -
  D4I31_RS03355 - 690576..691010 (+) 435 WP_139534482.1 hypothetical protein -
  D4I31_RS03360 - 691010..692131 (+) 1122 WP_201738180.1 DUF1542 domain-containing protein -
  D4I31_RS03370 - 692347..693483 (-) 1137 WP_139534486.1 NAD-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=280912 D4I31_RS03335 WP_000736478.1 688343..688627(-) (comB2) [Helicobacter pylori strain 23-A-EK1]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=280912 D4I31_RS03335 WP_000736478.1 688343..688627(-) (comB2) [Helicobacter pylori strain 23-A-EK1]
ATGAAAAAATTAAGTCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553