Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7K38_RS04300 Genome accession   NZ_CP027783
Coordinates   903666..905036 (-) Length   456 a.a.
NCBI ID   WP_123934985.1    Uniprot ID   -
Organism   Tetragenococcus osmophilus strain JCM 31126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898666..910036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K38_RS04285 (C7K38_04270) cysS 898898..900307 (-) 1410 WP_123934979.1 cysteine--tRNA ligase -
  C7K38_RS04290 (C7K38_04275) gltX 900921..902378 (-) 1458 WP_227874576.1 glutamate--tRNA ligase -
  C7K38_RS04295 (C7K38_04280) - 902517..903638 (-) 1122 WP_123934983.1 PIN/TRAM domain-containing protein -
  C7K38_RS04300 (C7K38_04285) radA 903666..905036 (-) 1371 WP_123934985.1 DNA repair protein RadA Machinery gene
  C7K38_RS04305 (C7K38_04290) - 905060..905560 (-) 501 WP_123934987.1 dUTP diphosphatase -
  C7K38_RS04310 (C7K38_04295) - 905752..906663 (+) 912 WP_174705888.1 aldo/keto reductase -
  C7K38_RS04315 (C7K38_04300) proB 906821..907627 (+) 807 WP_123934989.1 glutamate 5-kinase -
  C7K38_RS04320 (C7K38_04305) - 907624..908871 (+) 1248 WP_123934991.1 glutamate-5-semialdehyde dehydrogenase -
  C7K38_RS04325 (C7K38_04310) - 908907..909545 (-) 639 WP_123934993.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50077.61 Da        Isoelectric Point: 6.5188

>NTDB_id=280610 C7K38_RS04300 WP_123934985.1 903666..905036(-) (radA) [Tetragenococcus osmophilus strain JCM 31126]
MAKKAKTQFECQHCGYISPRYLGKCPNCGSWNSMVEEKIQDTTDRKSRSTLTGEKMQPTLLKDVVPKKEPRVKTALNELN
RVLGGGVVPGSMVLLGGDPGIGKSTLLLQVSQQLAATGGKVLYVSGEESAEQIKLRAQRLGDEANNFYLFAETDMQNIRE
TIENLEPDYVIIDSIQTMTQPDISSVAGSVSQVRETTAELLKIAKANEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDMHQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVINPSQVFLEERLEGTSGSSIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLATAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYLPKNNLSGWKAPDDIEVVGVATLDETLKRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=280610 C7K38_RS04300 WP_123934985.1 903666..905036(-) (radA) [Tetragenococcus osmophilus strain JCM 31126]
ATGGCAAAAAAGGCAAAAACACAGTTTGAATGCCAACATTGTGGGTATATTTCTCCACGATATTTGGGAAAATGTCCTAA
TTGCGGTAGTTGGAATTCAATGGTAGAAGAAAAAATCCAAGATACTACTGATCGTAAGAGTCGTTCTACCTTAACTGGGG
AAAAGATGCAACCAACGCTTTTAAAAGACGTGGTCCCCAAAAAAGAACCACGGGTAAAGACAGCTTTGAATGAATTAAAC
CGTGTGCTAGGTGGAGGCGTGGTACCAGGTTCAATGGTTCTATTAGGCGGTGATCCTGGTATAGGAAAATCCACACTACT
CTTACAAGTGTCACAACAATTGGCAGCAACTGGCGGTAAAGTTCTTTATGTTTCCGGTGAAGAAAGTGCGGAACAAATTA
AATTACGAGCTCAACGTTTAGGCGATGAAGCGAATAATTTTTATTTATTTGCAGAAACAGATATGCAAAACATTCGGGAA
ACAATTGAAAATTTGGAGCCAGATTATGTCATCATCGATTCTATTCAAACGATGACTCAACCAGATATTTCCAGTGTTGC
TGGAAGTGTCAGTCAGGTCCGGGAAACAACAGCTGAGTTATTAAAAATTGCTAAAGCAAATGAAATTGCTGTTTTTGTAG
TAGGACATGTGACCAAAGAAGGCTCTATTGCTGGCCCTCGTATGCTTGAACATATGGTTGATACGGTTTTATATTTTGAA
GGAGATATGCATCAAAGTTTTCGTATACTACGAGCTGTCAAAAATCGCTTTGGTTCAACAAATGAAATTGGTATTTTTGA
AATGTACGAACAAGGCTTAAAAGAAGTGATTAATCCTTCACAAGTCTTTTTAGAAGAACGGTTAGAAGGTACTAGTGGTT
CTTCAATCGTAGTAGCCATGGAAGGAACTCGCCCTATTTTAGTTGAAATTCAAGCTTTAGTAACTCCAACAATGTTTGGT
AATGCCAAACGAACGACTACAGGGCTTGATTTTAACCGAGTTTCTTTAATTATGGCAGTTTTAGAAAAACGCGCTGGCTT
GCTTTTACAAAACCAAGATGCTTATTTAAAAGCAGCAGGCGGCGTAAAATTAAATGAACCAGCAATTGATTTAGCCACTG
CGATTAGTATTGCTTCAAGTTATAAAGAAAAAGGAACTAAACCTACTGAATGCTTTATTGGCGAAATTGGTTTGACTGGT
GAGATTCGTCGAGTTAGCGCCATTGAACAGCGCGTAAAAGAAGTTCAGAAATTAGGCTTTGAAAAAGTTTATTTACCAAA
AAATAATTTAAGCGGTTGGAAAGCGCCAGATGACATTGAGGTTGTTGGAGTAGCAACACTTGATGAAACATTAAAACGCG
TATTTCGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

71.209

99.781

0.711
  radA Streptococcus pneumoniae Rx1

71.209

99.781

0.711
  radA Streptococcus pneumoniae D39

71.209

99.781

0.711
  radA Streptococcus pneumoniae R6

71.209

99.781

0.711
  radA Streptococcus pneumoniae TIGR4

71.209

99.781

0.711
  radA Streptococcus mitis SK321

71.209

99.781

0.711
  radA Bacillus subtilis subsp. subtilis str. 168

64.08

98.904

0.634

Multiple sequence alignment