Detailed information NTG0028055

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DNO_RS05550
• Genome accession: NC_009446
• Coordinates: 1170298..1171158 (-)
• Length: 286 a.a.
• NCBI ID: WP_012031428.1
• Uniprot ID: -
• Organism: Dichelobacter nodosus VCS1703A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1165298..1176158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DNO_RS05520 (DNO_1118)	aspS	1165572..1167359 (+)	1788	WP_012031422.1	aspartate--tRNA ligase	-
DNO_RS05525 (DNO_1119)	rplI	1167429..1167878 (-)	450	WP_012031423.1	50S ribosomal protein L9	-
DNO_RS05530 (DNO_1120)	rpsR	1167891..1168106 (-)	216	WP_012031424.1	30S ribosomal protein S18	-
DNO_RS05535 (DNO_1121)	rpsF	1168117..1168443 (-)	327	WP_012031425.1	30S ribosomal protein S6	-
DNO_RS05540 (DNO_1123)	-	1168654..1169721 (+)	1068	WP_012031426.1	ribonuclease D	-
DNO_RS05545 (DNO_1122)	coaE	1169708..1170301 (-)	594	WP_012031427.1	dephospho-CoA kinase	-
DNO_RS05550 (DNO_1124)	pilD	1170298..1171158 (-)	861	WP_012031428.1	A24 family peptidase	Machinery gene
DNO_RS05555 (DNO_1125)	-	1171158..1172381 (-)	1224	WP_012031429.1	type II secretion system F family protein	-
DNO_RS05560 (DNO_1126)	pilB	1172401..1174095 (-)	1695	WP_012031430.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DNO_RS05565 (DNO_1127)	-	1174092..1174691 (-)	600	WP_187145767.1	aminodeoxychorismate/anthranilate synthase component II	-
DNO_RS05570 (DNO_1128)	-	1174756..1175445 (+)	690	WP_012031432.1	recombination protein O N-terminal domain-containing protein	-
DNO_RS05575 (DNO_1129)	rplM	1175668..1176099 (+)	432	WP_012031433.1	50S ribosomal protein L13	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31863.18 Da
• Isoelectric Point: 7.5877

>NTDB_id=28055 DNO_RS05550 WP_012031428.1 1170298..1171158(-) (pilD) [Dichelobacter nodosus VCS1703A]
MLISELLQTPLGIFFVGLFSLMVGSFLNVVIYRVPVMMDREEKQYAWQVFHGEDSVCPEIPKQRFNLLVPASRCPHCGHR
IRAIENIPVISWLFLKGKCSGCGAAISARYLLVELLTAALSVIVAFHYHDPLSLGFALVFTWTLIALCFIDAEHQLLPDR
LTLPLLWLGILAALFNVFINLESSVIGAMIGYLSLWSVYWLFKLITGREGMGYGDFKLLACLCAWQGAWMLPIILFSAAI
LGMIYALGIGLRMGKPMPFGPFLAIAGWLTFLYGAQIGQLFGYFPA

Nucleotide

• Length: 861 bp

>NTDB_id=28055 DNO_RS05550 WP_012031428.1 1170298..1171158(-) (pilD) [Dichelobacter nodosus VCS1703A]
ATGCTTATCAGCGAATTATTACAAACGCCATTGGGTATTTTTTTCGTCGGACTGTTTAGTTTGATGGTGGGCAGTTTTCT
CAATGTTGTTATCTATCGCGTTCCGGTCATGATGGATCGCGAGGAAAAGCAATATGCATGGCAAGTTTTTCATGGCGAAG
ATAGCGTTTGCCCCGAAATACCCAAACAACGTTTTAATTTATTGGTGCCTGCTTCTCGATGCCCTCATTGTGGGCATCGT
ATTCGGGCAATTGAAAATATTCCCGTGATTAGTTGGTTGTTTTTGAAGGGAAAATGTTCTGGGTGCGGCGCGGCGATTTC
AGCTCGCTATTTGTTGGTTGAATTGTTGACCGCTGCCTTAAGCGTTATTGTTGCTTTCCATTATCACGATCCGCTCTCTC
TGGGATTTGCTTTGGTTTTTACTTGGACGTTGATCGCTTTATGTTTTATTGACGCCGAACACCAATTACTTCCCGATCGC
CTGACATTACCGCTCTTATGGTTGGGGATTTTAGCTGCTTTATTTAATGTTTTCATAAACTTAGAAAGTAGCGTTATTGG
TGCCATGATTGGTTATTTATCTTTATGGTCGGTTTATTGGCTTTTTAAATTAATCACCGGTCGCGAGGGTATGGGCTACG
GCGATTTCAAATTGCTGGCGTGTTTATGCGCGTGGCAGGGTGCATGGATGTTGCCGATTATCCTATTTTCTGCGGCGATC
TTGGGCATGATTTACGCACTTGGCATTGGTTTACGAATGGGAAAACCTATGCCGTTTGGTCCTTTTTTAGCCATTGCTGG
CTGGCTTACGTTTTTATACGGCGCCCAAATTGGGCAATTGTTCGGATATTTTCCCGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Vibrio cholerae strain A1552	52.632	93.007	0.49
pilD	Acinetobacter baumannii D1279779	49.814	94.056	0.469
pilD	Acinetobacter nosocomialis M2	49.071	94.056	0.462
pilD	Neisseria gonorrhoeae MS11	45.865	93.007	0.427