Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HSM_RS00045 Genome accession   NC_010519
Coordinates   7321..7989 (+) Length   222 a.a.
NCBI ID   WP_011608296.1    Uniprot ID   B0UUW7
Organism   Histophilus somni 2336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321..12989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00015 (HSM_0003) recF 2762..3838 (+) 1077 WP_012341166.1 DNA replication/repair protein RecF -
  HSM_RS00020 (HSM_0004) crp 3895..4539 (-) 645 WP_011608291.1 cAMP-activated global transcriptional regulator CRP Regulator
  HSM_RS00025 (HSM_0005) - 4552..4776 (-) 225 WP_012341336.1 YheU family protein -
  HSM_RS00030 (HSM_0006) slmA 4811..5470 (-) 660 WP_011608293.1 nucleoid occlusion factor SlmA -
  HSM_RS00035 (HSM_0007) dut 5470..5925 (-) 456 WP_011608294.1 dUTP diphosphatase -
  HSM_RS00040 (HSM_0008) coaBC 5922..7148 (-) 1227 WP_012341613.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HSM_RS00045 (HSM_0009) radC 7321..7989 (+) 669 WP_011608296.1 DNA repair protein RadC Machinery gene
  HSM_RS00050 (HSM_0010) rpmB 8210..8446 (+) 237 WP_011608297.1 50S ribosomal protein L28 -
  HSM_RS00055 (HSM_0011) rpmG 8458..8628 (+) 171 WP_005542835.1 50S ribosomal protein L33 -
  HSM_RS00060 (HSM_0012) mutM 8734..9546 (+) 813 WP_012340376.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  HSM_RS00065 (HSM_0013) ilvG 9638..11314 (+) 1677 WP_012340456.1 acetolactate synthase 2 catalytic subunit -
  HSM_RS00070 (HSM_0014) ilvM 11318..11536 (+) 219 WP_011608300.1 acetolactate synthase 2 small subunit -
  HSM_RS00075 (HSM_0015) - 11602..12264 (+) 663 WP_012340638.1 MOSC domain-containing protein -
  HSM_RS00080 (HSM_0016) - 12384..12887 (+) 504 WP_011608302.1 chorismate lyase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25553.76 Da        Isoelectric Point: 7.3730

>NTDB_id=28052 HSM_RS00045 WP_011608296.1 7321..7989(+) (radC) [Histophilus somni 2336]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=28052 HSM_RS00045 WP_011608296.1 7321..7989(+) (radC) [Histophilus somni 2336]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGACCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT
TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTCGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

64.815

97.297

0.631

Multiple sequence alignment