Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J99_RS16890 Genome accession   NZ_CP027758
Coordinates   3790864..3793089 (-) Length   741 a.a.
NCBI ID   WP_241194719.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R2-54-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785864..3798089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J99_RS16855 (C4J99_3375) murB 3786233..3787252 (-) 1020 WP_124401033.1 UDP-N-acetylmuramate dehydrogenase -
  C4J99_RS16860 (C4J99_3376) - 3787249..3787713 (-) 465 WP_124401034.1 low molecular weight protein-tyrosine-phosphatase -
  C4J99_RS16865 (C4J99_3377) kdsB 3787713..3788477 (-) 765 WP_124401035.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J99_RS16870 (C4J99_3378) - 3788474..3788659 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J99_RS16875 (C4J99_3379) lpxK 3788684..3789694 (-) 1011 WP_124401036.1 tetraacyldisaccharide 4'-kinase -
  C4J99_RS16880 (C4J99_3380) - 3789694..3790122 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  C4J99_RS16885 (C4J99_3381) exbB 3790119..3790754 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J99_RS16890 (C4J99_3382) comA 3790864..3793089 (-) 2226 WP_241194719.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J99_RS16895 (C4J99_3383) - 3793225..3793740 (+) 516 WP_124401037.1 DUF2062 domain-containing protein -
  C4J99_RS16900 (C4J99_3384) - 3793745..3795103 (-) 1359 WP_124401038.1 sensor histidine kinase -
  C4J99_RS16905 (C4J99_3385) - 3795090..3795818 (-) 729 WP_124401039.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80177.09 Da        Isoelectric Point: 10.6590

>NTDB_id=280221 C4J99_RS16890 WP_241194719.1 3790864..3793089(-) (comA) [Pseudomonas synxantha strain R2-54-08W]
MKTAMLALALGLLALRWLPALPSGAGVLGMLVLVLMLLPFRTYPVAFFLLGLSWACISAQWALDDRLRPVLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLLAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARHGCWPRTWPWLPWACGLAFAGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLVLEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSAWQVWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDGLLWLAGGALDGLFKGLALLAVRLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKLGVGQLEMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPGFLGTQPCTSGERWEWDGVAFELWQWAGASDGNPRSCVLQVEANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280221 C4J99_RS16890 WP_241194719.1 3790864..3793089(-) (comA) [Pseudomonas synxantha strain R2-54-08W]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGCTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGTCTGGTGCAGGGGT
CTTGGGCATGTTGGTGCTGGTGTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCGTTCTTCCTGTTGGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGGCCGGTGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAACAGACGGGCACAAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCCACGGTTAACAGCGGGGAGCGCTGGCGCCTGGCATTGACGCTGA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCCACCGCG
ACCGTGAAGGACGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGACGCTGTCCGACAGCGCCTGCTGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCCTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCCATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCATTTGCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGAGCTTGCGTCATGGTGGGGCTGGTGTTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTTTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGGTGCTTGAGCCCCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGCCCCCAGTGGTTGATCGCCATTGGGTTGTTTCCGGTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCCGTGCCATGGATCAGCCTGGTGGTGTTACCCCTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGCGACGGTTTGCTGTGGTTGGCGGGTGGCGCGCTGGACGGCTTGTT
CAAGGGCCTGGCACTGCTTGCTGTGCGACTGCCGGCCTGGATACCGGCCGAAGTACCTTTGGGCTATTGGCTGGTGAGCC
TGGCCGGCGCAGTGATTTTGCTATTGCCCAAGGGCCTCCCGTTTCGGTTATTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAGGGAGTCGATACCCCATGGACAGGTGGACGTGGTGCAGCTGGATGTCGGCCAGGGACAGGCGCTGATCCT
GCGCACCCGCCATCACTCCTTGCTCTATGACGCCGGGCCCCGGTCGGGGCCTGTCGACCAGGGTGCACGGGTCGTCTTGC
CGTCGTTGAAAAAGCTTGGGGTAGGGCAGTTGGAGATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GCGGCAGTGGCCCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGCGAAACCGAAGGCCTGCCAGGGTTTCTCGGTACCCA
GCCCTGTACCAGCGGCGAGCGGTGGGAATGGGATGGCGTGGCCTTTGAATTGTGGCAATGGGCCGGTGCAAGTGATGGCA
ATCCGAGGTCCTGCGTACTGCAGGTCGAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CAGGCATTCCTGGCCTCGCCCCTGGCGGTGCCGACCGATTGGCTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGCGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCCTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCTGTGCGCCTGCGCCTG
GGAACGTTCCTGCCGCCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.11

97.031

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.472

100

0.381

Multiple sequence alignment