Detailed information NTG0280208

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: C4K00_RS27445
• Genome accession: NZ_CP027757
• Coordinates: 5982488..5983984 (+)
• Length: 498 a.a.
• NCBI ID: WP_068965771.1
• Uniprot ID: -
• Organism: Pseudomonas synxantha strain R2-4-08W
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5977488..5988984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K00_RS27415 (C4K00_5458)	-	5977959..5978654 (+)	696	WP_124402308.1	HAD family hydrolase	-
C4K00_RS27420 (C4K00_5459)	sutA	5978848..5979180 (-)	333	WP_124402309.1	transcriptional regulator SutA	-
C4K00_RS27425 (C4K00_5460)	-	5979283..5979708 (-)	426	WP_124402310.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
C4K00_RS27430 (C4K00_5461)	-	5979918..5981255 (-)	1338	WP_043046900.1	ammonium transporter	-
C4K00_RS27435 (C4K00_5462)	glnK	5981290..5981628 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
C4K00_RS27440 (C4K00_5463)	-	5982052..5982315 (+)	264	WP_043046899.1	accessory factor UbiK family protein	-
C4K00_RS27445 (C4K00_5464)	comM	5982488..5983984 (+)	1497	WP_068965771.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
C4K00_RS27450 (C4K00_5465)	-	5983991..5984566 (-)	576	WP_124402311.1	TetR/AcrR family transcriptional regulator	-
C4K00_RS27455 (C4K00_5466)	-	5984681..5985595 (+)	915	WP_124402312.1	ABC transporter six-transmembrane domain-containing protein	-
C4K00_RS27460 (C4K00_5467)	-	5985599..5987575 (-)	1977	WP_124402313.1	methyl-accepting chemotaxis protein	-
C4K00_RS27465 (C4K00_5468)	-	5987753..5988673 (-)	921	WP_046070071.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 53438.65 Da
• Isoelectric Point: 7.9135

>NTDB_id=280208 C4K00_RS27445 WP_068965771.1 5982488..5983984(+) (comM) [Pseudomonas synxantha strain R2-4-08W]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLQPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQI
GETTAQASAQVAQARERQQQRQGCANAFLDLPRLREHCQLAKADETWLEAACERLTLSLRAAHRLLKVARTLADLEQVDG
IARHHLAEALQYRPAAIG

Nucleotide

• Length: 1497 bp

>NTDB_id=280208 C4K00_RS27445 WP_068965771.1 5982488..5983984(+) (comM) [Pseudomonas synxantha strain R2-4-08W]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGTCTGCCATCACTGACACTGGTGGGTTTGCCGGAGACGGCGGTGAAAGAGAGCAAAGACCGCGTGCGCAGTGCCATTT
TGAATTCGGCGCTGCAATACCCAGCACGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCGCTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGATGAGGTGGAGTGCCT
GGGGGAGCTGGCGCTATCCGGCGAGGTGCGGGCGGTGAAAGGCGTGCTGCCGGCAGCACTGGCAGCGCGCAAGGCTGGGC
GCACCGTGATAGTGCCCCGAGCCAATGCCGAGGAAGCGTGCCTGGCGTCTGGATTGAAAGTGATTGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAATGGACACGTGCCGATTGAACCCTACACATCCGACGGCCTGCTGTATTTGAACAAACC
CTACCCGGACCTGAGTGAGGTACAGGGCCAATTGGCGGCCAAGCGTGCGCTGCTGATCGCCGCGGCCGGTGCGCATAACC
TGTTGTTCAGTGGCCCCCCGGGCACCGGTAAGACCCTGCTCGCCAGCCGGCTGCCGGGCTTGCTGCCACCGTTGAGCGAG
CAGGAAGCCCTGGAAGTGGCAGCGATCCAATCCGTGGTCAGCCTCCAGCCCCTTAGTCATTGGCCTAACCGCCCGTTCCG
GCAACCGCACCATTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAACCGGGGGAAATCACCCTGGCCC
ACCACGGGGTGCTGTTCCTGGATGAACTGCCGGAGTTTGATCGTAAGGTGCTGGAAGTGCTGCGCGAGCCATTGGAGTCT
GGGCATATCGTGATCTCTCGAGCCCGTGACCGGGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCTTGTGGCTACATGGGTGAGCCCAGTGGGCGTTGCCGGTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGCATTGATTTGCACCTGACGGTGGCCCGGGAGACCACTGCGCTGAATCCCTCCCAACAGATC
GGCGAAACCACCGCTCAGGCATCCGCCCAGGTAGCGCAAGCCCGCGAGCGTCAGCAACAACGCCAGGGCTGTGCCAATGC
GTTTCTCGACCTGCCGCGGCTGCGCGAACACTGCCAGCTGGCAAAAGCCGATGAAACCTGGCTGGAGGCCGCGTGTGAAC
GCCTGACGCTATCCCTGCGCGCCGCACACCGGCTGCTCAAGGTAGCGCGCACGCTAGCGGATCTTGAGCAAGTAGACGGC
ATCGCTCGCCATCATTTGGCGGAGGCATTGCAGTACCGGCCGGCCGCGATTGGCTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.768	99.398	0.564
comM	Glaesserella parasuis strain SC1401	55.888	100	0.562
comM	Vibrio cholerae strain A1552	56.364	99.398	0.56
comM	Haemophilus influenzae Rd KW20	55.4	100	0.556
comM	Legionella pneumophila str. Paris	50.605	99.598	0.504
comM	Legionella pneumophila strain ERS1305867	50.605	99.598	0.504
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.466