Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   XFASM12_RS05660 Genome accession   NC_010513
Coordinates   1282068..1282664 (-) Length   198 a.a.
NCBI ID   WP_004084887.1    Uniprot ID   -
Organism   Xylella fastidiosa M12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277068..1287664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM12_RS05635 (Xfasm12_1210) - 1277202..1278155 (+) 954 WP_012337872.1 MoxR family ATPase -
  XFASM12_RS05640 (Xfasm12_1211) - 1278158..1279117 (+) 960 WP_004084883.1 DUF58 domain-containing protein -
  XFASM12_RS05645 (Xfasm12_1212) - 1279110..1281167 (+) 2058 WP_012337873.1 DUF3488 and transglutaminase-like domain-containing protein -
  XFASM12_RS05650 (Xfasm12_1213) - 1281061..1281582 (+) 522 WP_027700741.1 Slp/YeaY family lipoprotein -
  XFASM12_RS05655 (Xfasm12_1214) - 1281649..1281996 (-) 348 WP_014607772.1 histidine triad nucleotide-binding protein -
  XFASM12_RS05660 (Xfasm12_1215) recR 1282068..1282664 (-) 597 WP_004084887.1 recombination mediator RecR Machinery gene
  XFASM12_RS05665 (Xfasm12_1216) - 1282857..1283177 (-) 321 WP_004572794.1 YbaB/EbfC family nucleoid-associated protein -
  XFASM12_RS05670 (Xfasm12_1217) dnaX 1283184..1284989 (-) 1806 WP_004084889.1 DNA polymerase III subunit gamma/tau -
  XFASM12_RS12820 - 1285420..1285743 (+) 324 WP_004085098.1 hypothetical protein -
  XFASM12_RS05685 - 1285706..1286203 (+) 498 WP_004084890.1 hypothetical protein -
  XFASM12_RS05690 (Xfasm12_1219) - 1286460..1286759 (-) 300 WP_021358520.1 DNA adenine methylase -
  XFASM12_RS12825 - 1286752..1286907 (-) 156 WP_014607774.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21759.79 Da        Isoelectric Point: 6.5786

>NTDB_id=28020 XFASM12_RS05660 WP_004084887.1 1282068..1282664(-) (recR) [Xylella fastidiosa M12]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHVLEREREGGQRLADVLSRAIEKIGHCTECRDFSETKICAICANSSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=28020 XFASM12_RS05660 WP_004084887.1 1282068..1282664(-) (recR) [Xylella fastidiosa M12]
ATGAGTACACATTTGCTTGAGCAGTTAATTGACGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGTAT
GGCCTACCATGTGCTCGAGCGCGAGCGTGAAGGTGGACAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAGAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCAAAATCTGTGCGATCTGCGCTAACTCCAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTACCGTGGACTATATTTTATTTTGCA
GGGGCGCCTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTAGGACAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTCATCATTGCGACTAATGCGACGGTGGAGGGTGAGACGACAGCGCACTACTTAGCGCTCCTGGCGCGC
CAACACGGTATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCACGCGTTCGGCACCCGTACTGAAGTGGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

42.188

96.97

0.409
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374

Multiple sequence alignment