Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K04_RS30050 Genome accession   NZ_CP027753
Coordinates   6533618..6534025 (-) Length   135 a.a.
NCBI ID   WP_124322682.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain B25     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6528618..6539025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K04_RS30035 (C4K04_6105) - 6530497..6532533 (-) 2037 WP_241177339.1 methyl-accepting chemotaxis protein -
  C4K04_RS30040 (C4K04_6106) - 6532658..6533197 (-) 540 WP_124322680.1 chemotaxis protein CheW -
  C4K04_RS30045 (C4K04_6107) pilH 6533209..6533574 (-) 366 WP_124322681.1 twitching motility response regulator PilH -
  C4K04_RS30050 (C4K04_6108) pilG 6533618..6534025 (-) 408 WP_124322682.1 twitching motility response regulator PilG Regulator
  C4K04_RS30055 (C4K04_6109) gshB 6534262..6535236 (+) 975 WP_124322683.1 glutathione synthase -
  C4K04_RS30060 (C4K04_6110) - 6535406..6536305 (+) 900 WP_124322684.1 energy transducer TonB -
  C4K04_RS30065 (C4K04_6111) - 6536531..6537100 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  C4K04_RS30070 (C4K04_6112) ruvX 6537100..6537537 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K04_RS30075 (C4K04_6113) pyrR 6537659..6538165 (+) 507 WP_124322685.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14651.03 Da        Isoelectric Point: 7.2445

>NTDB_id=280108 C4K04_RS30050 WP_124322682.1 6533618..6534025(-) (pilG) [Pseudomonas chlororaphis strain B25]
MEQQSGALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=280108 C4K04_RS30050 WP_124322682.1 6533618..6534025(-) (pilG) [Pseudomonas chlororaphis strain B25]
ATGGAACAGCAATCCGGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGCTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGTTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment