Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K04_RS09880 Genome accession   NZ_CP027753
Coordinates   2129602..2130237 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain B25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2124602..2135237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K04_RS09860 (C4K04_1996) - 2124847..2125779 (+) 933 WP_124319896.1 ABC transporter ATP-binding protein -
  C4K04_RS09865 (C4K04_1997) - 2125776..2126555 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K04_RS09870 (C4K04_1998) - 2126604..2127119 (-) 516 WP_124319897.1 DUF2062 domain-containing protein -
  C4K04_RS09875 (C4K04_1999) comA 2127268..2129499 (+) 2232 WP_124319898.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K04_RS09880 (C4K04_2000) exbB 2129602..2130237 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K04_RS09885 (C4K04_2001) - 2130234..2130662 (+) 429 WP_007931660.1 biopolymer transporter ExbD -
  C4K04_RS09890 (C4K04_2002) lpxK 2130662..2131672 (+) 1011 WP_124319899.1 tetraacyldisaccharide 4'-kinase -
  C4K04_RS09895 (C4K04_2003) - 2131696..2131881 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K04_RS09900 (C4K04_2004) kdsB 2131878..2132642 (+) 765 WP_124319900.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K04_RS09905 (C4K04_2005) - 2132642..2133106 (+) 465 WP_096373430.1 low molecular weight protein-tyrosine-phosphatase -
  C4K04_RS09910 (C4K04_2006) murB 2133103..2134122 (+) 1020 WP_124319901.1 UDP-N-acetylmuramate dehydrogenase -
  C4K04_RS09915 (C4K04_2007) - 2134371..2134841 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=280095 C4K04_RS09880 WP_009047817.1 2129602..2130237(+) (exbB) [Pseudomonas chlororaphis strain B25]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280095 C4K04_RS09880 WP_009047817.1 2129602..2130237(+) (exbB) [Pseudomonas chlororaphis strain B25]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCGCATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGCGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment