Detailed information NTG0280094

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K04_RS09875
• Genome accession: NZ_CP027753
• Coordinates: 2127268..2129499 (+)
• Length: 743 a.a.
• NCBI ID: WP_124319898.1
• Uniprot ID: A0A3G7TKR4
• Organism: Pseudomonas chlororaphis strain B25
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2122268..2134499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K04_RS09850 (C4K04_1994)	-	2123389..2124048 (+)	660	WP_124319894.1	transglutaminase family protein	-
C4K04_RS09855 (C4K04_1995)	-	2124091..2124714 (+)	624	WP_124319895.1	glutathione S-transferase	-
C4K04_RS09860 (C4K04_1996)	-	2124847..2125779 (+)	933	WP_124319896.1	ABC transporter ATP-binding protein	-
C4K04_RS09865 (C4K04_1997)	-	2125776..2126555 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K04_RS09870 (C4K04_1998)	-	2126604..2127119 (-)	516	WP_124319897.1	DUF2062 domain-containing protein	-
C4K04_RS09875 (C4K04_1999)	comA	2127268..2129499 (+)	2232	WP_124319898.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K04_RS09880 (C4K04_2000)	exbB	2129602..2130237 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K04_RS09885 (C4K04_2001)	-	2130234..2130662 (+)	429	WP_007931660.1	biopolymer transporter ExbD	-
C4K04_RS09890 (C4K04_2002)	lpxK	2130662..2131672 (+)	1011	WP_124319899.1	tetraacyldisaccharide 4'-kinase	-
C4K04_RS09895 (C4K04_2003)	-	2131696..2131881 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K04_RS09900 (C4K04_2004)	kdsB	2131878..2132642 (+)	765	WP_124319900.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K04_RS09905 (C4K04_2005)	-	2132642..2133106 (+)	465	WP_096373430.1	low molecular weight protein-tyrosine-phosphatase	-
C4K04_RS09910 (C4K04_2006)	murB	2133103..2134122 (+)	1020	WP_124319901.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81135.26 Da
• Isoelectric Point: 9.9468

>NTDB_id=280094 C4K04_RS09875 WP_124319898.1 2127268..2129499(+) (comA) [Pseudomonas chlororaphis strain B25]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGSWRARIRQRLLQVDAHGRAGGLVALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLTVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHTMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFALWQWADAQNGNQKSCVMQLEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GAYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=280094 C4K04_RS09875 WP_124319898.1 2127268..2129499(+) (comA) [Pseudomonas chlororaphis strain B25]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGACTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTAGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGCAGCTGGCGCGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGTGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGTCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCATCTGGGGGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGTTGATCCTGATCTTCGGCGGACGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATTGCCATCGGCTTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGACGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCTGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTGCTGGCCGCACAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGTATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTACCCGCGGGGGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACACGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
ACCTTGCGCCAGTGGCGAGCAATGGCAATGGGACGGCGTACGTTTTGCCCTGTGGCAATGGGCGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGCTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGAGCGTTGCTGGATACCCCGCTGGCCGTCGAGACTCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCGCCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

3D structure

• AlphaFold DB: A0A3G7TKR4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622