Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C20_RS04965 Genome accession   NZ_CP032867
Coordinates   925334..925969 (-) Length   211 a.a.
NCBI ID   WP_014480830.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 920334..930969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS04945 (D9C20_04945) yvzF 921396..921581 (-) 186 WP_014480826.1 YvzF family protein -
  D9C20_RS04950 (D9C20_04950) gerAA 921700..923148 (+) 1449 WP_014480827.1 spore germination receptor protein GerAA -
  D9C20_RS04955 (D9C20_04955) gerAB 923117..924214 (+) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  D9C20_RS04960 (D9C20_04960) gerAC 924211..925326 (+) 1116 WP_014480829.1 spore germination receptor protein GerAC -
  D9C20_RS04965 (D9C20_04965) vraR 925334..925969 (-) 636 WP_014480830.1 two-component system response regulator LiaR Regulator
  D9C20_RS04970 (D9C20_04970) liaS 925947..927029 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  D9C20_RS04975 (D9C20_04975) liaF 927026..927751 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  D9C20_RS04980 (D9C20_04980) liaG 927785..928657 (-) 873 WP_014480833.1 DUF4097 domain-containing protein -
  D9C20_RS04985 (D9C20_04985) liaH 928758..929435 (-) 678 WP_014480834.1 stress responsive protein LiaH -
  D9C20_RS04990 (D9C20_04990) liaI 929462..929842 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.79 Da        Isoelectric Point: 4.9049

>NTDB_id=280050 D9C20_RS04965 WP_014480830.1 925334..925969(-) (vraR) [Bacillus subtilis subsp. subtilis strain N4-2]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280050 D9C20_RS04965 WP_014480830.1 925334..925969(-) (vraR) [Bacillus subtilis subsp. subtilis strain N4-2]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398