Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   D9C20_RS04080 Genome accession   NZ_CP032867
Coordinates   757955..758818 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 752955..763818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS04045 (D9C20_04045) mrpE 753123..753599 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D9C20_RS04050 (D9C20_04050) mrpF 753599..753883 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D9C20_RS04055 (D9C20_04055) mnhG 753867..754241 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  D9C20_RS04060 (D9C20_04060) yuxO 754280..754660 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  D9C20_RS04065 (D9C20_04065) comA 754679..755323 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D9C20_RS04070 (D9C20_04070) comP 755404..757716 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  D9C20_RS04075 (D9C20_04075) comX 757732..757953 (-) 222 WP_014480704.1 competence pheromone ComX -
  D9C20_RS04080 (D9C20_04080) comQ 757955..758818 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  D9C20_RS04085 (D9C20_04085) degQ 759003..759143 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D9C20_RS04090 (D9C20_04090) - 759365..759490 (+) 126 WP_003228793.1 hypothetical protein -
  D9C20_RS04095 (D9C20_04095) - 759604..759972 (+) 369 WP_014477834.1 hypothetical protein -
  D9C20_RS04100 (D9C20_04100) pdeH 759948..761177 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  D9C20_RS04105 (D9C20_04105) pncB 761313..762785 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  D9C20_RS04110 (D9C20_04110) pncA 762801..763352 (-) 552 WP_014480709.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=280046 D9C20_RS04080 WP_014480705.1 757955..758818(-) (comQ) [Bacillus subtilis subsp. subtilis strain N4-2]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=280046 D9C20_RS04080 WP_014480705.1 757955..758818(-) (comQ) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439