Detailed information NTG0280027

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K07_RS26865
• Genome accession: NZ_CP027750
• Coordinates: 5950652..5951980 (+)
• Length: 442 a.a.
• NCBI ID: WP_038635209.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5945652..5956980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K07_RS26845 (C4K07_5437)	pgeF	5947151..5947876 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
C4K07_RS26850 (C4K07_5438)	rluD	5947873..5948835 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K07_RS26855 (C4K07_5439)	-	5948988..5950010 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K07_RS26860 (C4K07_5440)	-	5950145..5950378 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K07_RS26865 (C4K07_5441)	pilR	5950652..5951980 (+)	1329	WP_038635209.1	sigma-54-dependent transcriptional regulator	Regulator
C4K07_RS26870 (C4K07_5442)	thiO	5951977..5953077 (-)	1101	WP_103330734.1	glycine oxidase ThiO	-
C4K07_RS26875 (C4K07_5443)	-	5953132..5953533 (-)	402	WP_041987304.1	type IV pilin protein	-
C4K07_RS26880 (C4K07_5444)	-	5953547..5956618 (-)	3072	WP_124302173.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.14 Da
• Isoelectric Point: 8.7216

>NTDB_id=280027 C4K07_RS26865 WP_038635209.1 5950652..5951980(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=280027 C4K07_RS26865 WP_038635209.1 5950652..5951980(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGACTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.441	100	0.667
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455