Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K08_RS30005 Genome accession   NZ_CP027749
Coordinates   6622090..6622497 (-) Length   135 a.a.
NCBI ID   WP_009051308.1    Uniprot ID   A0AB33WTM4
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6617090..6627497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K08_RS29990 (C4K08_6037) - 6618969..6621005 (-) 2037 WP_227746013.1 methyl-accepting chemotaxis protein -
  C4K08_RS29995 (C4K08_6038) - 6621130..6621669 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  C4K08_RS30000 (C4K08_6039) pilH 6621681..6622046 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  C4K08_RS30005 (C4K08_6040) pilG 6622090..6622497 (-) 408 WP_009051308.1 twitching motility response regulator PilG Regulator
  C4K08_RS30010 (C4K08_6041) gshB 6622734..6623708 (+) 975 WP_009051309.1 glutathione synthase -
  C4K08_RS30015 (C4K08_6042) - 6623859..6624758 (+) 900 WP_007929970.1 energy transducer TonB -
  C4K08_RS30020 (C4K08_6043) - 6624951..6625520 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  C4K08_RS30025 (C4K08_6044) ruvX 6625520..6625957 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K08_RS30030 (C4K08_6045) pyrR 6626079..6626585 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14755.09 Da        Isoelectric Point: 6.7123

>NTDB_id=280005 C4K08_RS30005 WP_009051308.1 6622090..6622497(-) (pilG) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFESLAKIADNHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=280005 C4K08_RS30005 WP_009051308.1 6622090..6622497(-) (pilG) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCAGAAACGCTGTT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGTCCCTGGCCAAGATCGCCGACAACCACCCGGACA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment