Detailed information NTG0279992

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K08_RS09020
• Genome accession: NZ_CP027749
• Coordinates: 1992203..1994434 (+)
• Length: 743 a.a.
• NCBI ID: WP_063429108.1
• Uniprot ID: A0AAD1E519
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1987203..1999434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K08_RS08995 (C4K08_1813)	-	1988324..1988983 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K08_RS09000 (C4K08_1814)	-	1989026..1989649 (+)	624	WP_053268525.1	glutathione S-transferase	-
C4K08_RS09005 (C4K08_1815)	-	1989782..1990714 (+)	933	WP_009047814.1	ABC transporter ATP-binding protein	-
C4K08_RS09010 (C4K08_1816)	-	1990711..1991490 (+)	780	WP_063429107.1	ABC transporter permease	-
C4K08_RS09015 (C4K08_1817)	-	1991539..1992054 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
C4K08_RS09020 (C4K08_1818)	comA	1992203..1994434 (+)	2232	WP_063429108.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K08_RS09025 (C4K08_1819)	exbB	1994537..1995172 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K08_RS09030 (C4K08_1820)	-	1995169..1995597 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K08_RS09035 (C4K08_1821)	lpxK	1995597..1996607 (+)	1011	WP_063429110.1	tetraacyldisaccharide 4'-kinase	-
C4K08_RS09040 (C4K08_1822)	-	1996631..1996816 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K08_RS09045 (C4K08_1823)	kdsB	1996813..1997577 (+)	765	WP_063429112.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K08_RS09050 (C4K08_1824)	-	1997577..1998041 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K08_RS09055 (C4K08_1825)	murB	1998038..1999057 (+)	1020	WP_009047822.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81248.36 Da
• Isoelectric Point: 9.7323

>NTDB_id=279992 C4K08_RS09020 WP_063429108.1 1992203..1994434(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
MRTGMLALAAGLLSLCFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLAHYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279992 C4K08_RS09020 WP_063429108.1 1992203..1994434(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGTGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTTGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGACTGGCCCACTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTTTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAG
CGCGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626