Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K08_RS09025 Genome accession   NZ_CP027749
Coordinates   1994537..1995172 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989537..2000172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K08_RS09005 (C4K08_1815) - 1989782..1990714 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  C4K08_RS09010 (C4K08_1816) - 1990711..1991490 (+) 780 WP_063429107.1 ABC transporter permease -
  C4K08_RS09015 (C4K08_1817) - 1991539..1992054 (-) 516 WP_009047815.1 DUF2062 domain-containing protein -
  C4K08_RS09020 (C4K08_1818) comA 1992203..1994434 (+) 2232 WP_063429108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K08_RS09025 (C4K08_1819) exbB 1994537..1995172 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K08_RS09030 (C4K08_1820) - 1995169..1995597 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K08_RS09035 (C4K08_1821) lpxK 1995597..1996607 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  C4K08_RS09040 (C4K08_1822) - 1996631..1996816 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K08_RS09045 (C4K08_1823) kdsB 1996813..1997577 (+) 765 WP_063429112.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K08_RS09050 (C4K08_1824) - 1997577..1998041 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K08_RS09055 (C4K08_1825) murB 1998038..1999057 (+) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -
  C4K08_RS09060 (C4K08_1826) - 1999306..1999776 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=279993 C4K08_RS09025 WP_009047817.1 1994537..1995172(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279993 C4K08_RS09025 WP_009047817.1 1994537..1995172(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTTGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTTATGAAAGAGTGCATCGAGGAAGCTGCCGCCCGGGTCATTCACGAACTGGAGCGCTATCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGTTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment