Detailed information NTG0279950

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K17_RS27780
• Genome accession: NZ_CP027746
• Coordinates: 6151433..6152761 (+)
• Length: 442 a.a.
• NCBI ID: WP_081359715.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6146433..6157761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K17_RS27760 (C4K17_5643)	pgeF	6147934..6148659 (-)	726	WP_081359717.1	peptidoglycan editing factor PgeF	-
C4K17_RS27765 (C4K17_5644)	rluD	6148656..6149618 (-)	963	WP_081359716.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K17_RS27770 (C4K17_5645)	-	6149771..6150793 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K17_RS27775 (C4K17_5646)	-	6150928..6151161 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K17_RS27780 (C4K17_5647)	pilR	6151433..6152761 (+)	1329	WP_081359715.1	sigma-54 dependent transcriptional regulator	Regulator
C4K17_RS27785 (C4K17_5648)	thiO	6152758..6153858 (-)	1101	WP_081359714.1	glycine oxidase ThiO	-
C4K17_RS27790 (C4K17_5649)	-	6153913..6154314 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K17_RS27795 (C4K17_5650)	-	6154328..6157399 (-)	3072	WP_081359713.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48752.17 Da
• Isoelectric Point: 7.9404

>NTDB_id=279950 C4K17_RS27780 WP_081359715.1 6151433..6152761(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRMQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENQQIEARDLCLTPNSAHPAIAPGPTQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279950 C4K17_RS27780 WP_081359715.1 6151433..6152761(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCATGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGGCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTACCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCACTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCAGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGACACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457