Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K17_RS08830 Genome accession   NZ_CP027746
Coordinates   1953400..1954035 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1948400..1959035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K17_RS08810 (C4K17_1787) - 1948645..1949577 (+) 933 WP_081362295.1 ABC transporter ATP-binding protein -
  C4K17_RS08815 (C4K17_1788) - 1949574..1950353 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K17_RS08820 (C4K17_1789) - 1950402..1950917 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  C4K17_RS08825 (C4K17_1790) comA 1951066..1953297 (+) 2232 WP_081362294.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K17_RS08830 (C4K17_1791) exbB 1953400..1954035 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K17_RS08835 (C4K17_1792) - 1954032..1954460 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K17_RS08840 (C4K17_1793) lpxK 1954460..1955470 (+) 1011 WP_081362293.1 tetraacyldisaccharide 4'-kinase -
  C4K17_RS08845 (C4K17_1794) - 1955494..1955679 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K17_RS08850 (C4K17_1795) kdsB 1955676..1956440 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K17_RS08855 (C4K17_1796) - 1956440..1956904 (+) 465 WP_081362292.1 low molecular weight protein-tyrosine-phosphatase -
  C4K17_RS08860 (C4K17_1797) murB 1956901..1957920 (+) 1020 WP_081362291.1 UDP-N-acetylmuramate dehydrogenase -
  C4K17_RS08865 (C4K17_1798) - 1958169..1958639 (+) 471 WP_081362290.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279941 C4K17_RS08830 WP_007931657.1 1953400..1954035(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279941 C4K17_RS08830 WP_007931657.1 1953400..1954035(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACTACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment