Detailed information NTG0279940

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K17_RS08825
• Genome accession: NZ_CP027746
• Coordinates: 1951066..1953297 (+)
• Length: 743 a.a.
• NCBI ID: WP_081362294.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1946066..1958297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K17_RS08800 (C4K17_1785)	-	1947187..1947846 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K17_RS08805 (C4K17_1786)	-	1947889..1948512 (+)	624	WP_081362296.1	glutathione S-transferase	-
C4K17_RS08810 (C4K17_1787)	-	1948645..1949577 (+)	933	WP_081362295.1	ABC transporter ATP-binding protein	-
C4K17_RS08815 (C4K17_1788)	-	1949574..1950353 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K17_RS08820 (C4K17_1789)	-	1950402..1950917 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
C4K17_RS08825 (C4K17_1790)	comA	1951066..1953297 (+)	2232	WP_081362294.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K17_RS08830 (C4K17_1791)	exbB	1953400..1954035 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K17_RS08835 (C4K17_1792)	-	1954032..1954460 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K17_RS08840 (C4K17_1793)	lpxK	1954460..1955470 (+)	1011	WP_081362293.1	tetraacyldisaccharide 4'-kinase	-
C4K17_RS08845 (C4K17_1794)	-	1955494..1955679 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K17_RS08850 (C4K17_1795)	kdsB	1955676..1956440 (+)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K17_RS08855 (C4K17_1796)	-	1956440..1956904 (+)	465	WP_081362292.1	low molecular weight protein-tyrosine-phosphatase	-
C4K17_RS08860 (C4K17_1797)	murB	1956901..1957920 (+)	1020	WP_081362291.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81232.38 Da
• Isoelectric Point: 9.9468

>NTDB_id=279940 C4K17_RS08825 WP_081362294.1 1951066..1953297(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGGLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLVVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279940 C4K17_RS08825 WP_081362294.1 1951066..1953297(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAGCTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCAGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGGGGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
CTGGCGCTGGTGGCAATCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGTGGTGCCTTATCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAAGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGGCCGCGTTTGGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTGTCCAGCGCGGCTTACCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622