Detailed information NTG0279924

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K19_RS26500
• Genome accession: NZ_CP027744
• Coordinates: 5864892..5866220 (+)
• Length: 442 a.a.
• NCBI ID: WP_124312176.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M71
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5859892..5871220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K19_RS26480 (C4K19_5372)	pgeF	5861392..5862117 (-)	726	WP_124312175.1	peptidoglycan editing factor PgeF	-
C4K19_RS26485 (C4K19_5373)	rluD	5862114..5863076 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K19_RS26490 (C4K19_5374)	-	5863229..5864251 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K19_RS26495 (C4K19_5375)	-	5864386..5864619 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K19_RS26500 (C4K19_5376)	pilR	5864892..5866220 (+)	1329	WP_124312176.1	sigma-54 dependent transcriptional regulator	Regulator
C4K19_RS26505 (C4K19_5377)	thiO	5866217..5867317 (-)	1101	WP_124312177.1	glycine oxidase ThiO	-
C4K19_RS26510 (C4K19_5378)	-	5867372..5867773 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K19_RS26515 (C4K19_5379)	-	5867787..5870855 (-)	3069	WP_124312178.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48854.26 Da
• Isoelectric Point: 8.7101

>NTDB_id=279924 C4K19_RS26500 WP_124312176.1 5864892..5866220(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGALPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASIYIS
GESGSGKELVARTIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAYTLCENRQIEARDLRLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279924 C4K19_RS26500 WP_124312176.1 5864892..5866220(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
ATGGGTCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGTCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAACTGTTGAATGGCGCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTACGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAGTTGGCGGTGCCGCCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAATGGCCAACAATTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGTACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TACGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.111	100	0.683
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459