Detailed information NTG0279923

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K19_RS26330
• Genome accession: NZ_CP027744
• Coordinates: 5831526..5832398 (+)
• Length: 290 a.a.
• NCBI ID: WP_009050909.1
• Uniprot ID: A0AB33WWI2
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M71
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5826526..5837398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K19_RS26315 (C4K19_5340)	-	5828881..5829237 (-)	357	WP_009050906.1	BON domain-containing protein	-
C4K19_RS26320 (C4K19_5341)	-	5829525..5829941 (-)	417	WP_096375478.1	pilin	-
C4K19_RS26325 (C4K19_5342)	pilC	5830306..5831523 (+)	1218	WP_124312163.1	type II secretion system F family protein	Machinery gene
C4K19_RS26330 (C4K19_5343)	pilD	5831526..5832398 (+)	873	WP_009050909.1	A24 family peptidase	Machinery gene
C4K19_RS26335 (C4K19_5344)	coaE	5832395..5833018 (+)	624	WP_124312164.1	dephospho-CoA kinase	-
C4K19_RS26340 (C4K19_5345)	yacG	5833015..5833218 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K19_RS26345 (C4K19_5346)	-	5833223..5833438 (-)	216	WP_009050911.1	hypothetical protein	-
C4K19_RS26350 (C4K19_5347)	-	5833504..5834193 (-)	690	WP_124312165.1	energy-coupling factor ABC transporter permease	-
C4K19_RS26355 (C4K19_5348)	-	5834190..5834657 (-)	468	WP_124312166.1	FAD/FMN-containing dehydrogenase	-
C4K19_RS26360 (C4K19_5349)	-	5835112..5836548 (+)	1437	WP_124312167.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32050.22 Da
• Isoelectric Point: 7.9954

>NTDB_id=279923 C4K19_RS26330 WP_009050909.1 5831526..5832398(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279923 C4K19_RS26330 WP_009050909.1 5831526..5832398(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	97.931	0.517
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	50.909	94.828	0.483
pilD	Acinetobacter nosocomialis M2	50.182	94.828	0.476
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448