Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C18_RS04840 Genome accession   NZ_CP032865
Coordinates   893354..894001 (-) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 888354..899001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS04815 (D9C18_04815) nsrR 889956..890396 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  D9C18_RS04820 (D9C18_04820) lytF 890550..892010 (+) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  D9C18_RS04825 (D9C18_04825) yhdC 892052..892375 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  D9C18_RS04830 (D9C18_04830) yhdB 892576..892818 (+) 243 WP_003233373.1 YhdB family protein -
  D9C18_RS04835 (D9C18_04835) yhdA 892833..893357 (-) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  D9C18_RS04840 (D9C18_04840) vraR 893354..894001 (-) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  D9C18_RS04845 (D9C18_04845) yhcY 893998..895137 (-) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  D9C18_RS04850 (D9C18_04850) pgcA 895286..897031 (-) 1746 WP_014479288.1 phosphoglucomutase -
  D9C18_RS04855 (D9C18_04855) glpD 897163..898830 (-) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=279903 D9C18_RS04840 WP_014479290.1 893354..894001(-) (vraR) [Bacillus subtilis subsp. subtilis strain N3-1]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=279903 D9C18_RS04840 WP_014479290.1 893354..894001(-) (vraR) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment