Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K20_RS29440 Genome accession   NZ_CP027743
Coordinates   6490950..6491357 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain CW2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6485950..6496357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K20_RS29425 (C4K20_5972) - 6487829..6489865 (-) 2037 WP_227746013.1 methyl-accepting chemotaxis protein -
  C4K20_RS29430 (C4K20_5973) - 6489990..6490529 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  C4K20_RS29435 (C4K20_5974) pilH 6490541..6490906 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  C4K20_RS29440 (C4K20_5975) pilG 6490950..6491357 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  C4K20_RS29445 (C4K20_5976) gshB 6491595..6492569 (+) 975 WP_081359520.1 glutathione synthase -
  C4K20_RS29450 (C4K20_5977) - 6492720..6493619 (+) 900 WP_124300696.1 energy transducer TonB -
  C4K20_RS29455 (C4K20_5978) - 6493845..6494414 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  C4K20_RS29460 (C4K20_5979) ruvX 6494414..6494851 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K20_RS29465 (C4K20_5980) pyrR 6494973..6495479 (+) 507 WP_124300697.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=279902 C4K20_RS29440 WP_007929962.1 6490950..6491357(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279902 C4K20_RS29440 WP_007929962.1 6490950..6491357(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment