Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D9C18_RS02150 Genome accession   NZ_CP032865
Coordinates   400225..400800 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 395225..405800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS02130 (D9C18_02130) moeB 396123..397142 (-) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  D9C18_RS02135 (D9C18_02135) mobA 397193..397792 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  D9C18_RS02140 (D9C18_02140) cse15 397929..398894 (+) 966 WP_014479669.1 spore protein Cse15 -
  D9C18_RS02145 (D9C18_02145) - 399007..400157 (+) 1151 WP_087614160.1 IS3 family transposase -
  D9C18_RS02150 (D9C18_02150) rok 400225..400800 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  D9C18_RS02155 (D9C18_02155) ykuV 401266..401712 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  D9C18_RS02160 (D9C18_02160) ahpA 401782..402324 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  D9C18_RS02165 (D9C18_02165) mscT 402561..403364 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  D9C18_RS02170 (D9C18_02170) ykuS 403401..403646 (-) 246 WP_003232382.1 YkuS family protein -
  D9C18_RS02175 (D9C18_02175) dapI 403708..404832 (-) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  D9C18_RS02180 (D9C18_02180) dapD 404902..405612 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=279875 D9C18_RS02150 WP_003232378.1 400225..400800(-) (rok) [Bacillus subtilis subsp. subtilis strain N3-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=279875 D9C18_RS02150 WP_003232378.1 400225..400800(-) (rok) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment