Detailed information NTG0279870

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K21_RS26960
• Genome accession: NZ_CP027742
• Coordinates: 5989094..5989966 (+)
• Length: 290 a.a.
• NCBI ID: WP_009050909.1
• Uniprot ID: A0AB33WWI2
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain 464
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5984094..5994966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K21_RS26945 (C4K21_5495)	-	5986449..5986805 (-)	357	WP_009050906.1	BON domain-containing protein	-
C4K21_RS26950 (C4K21_5496)	-	5987093..5987509 (-)	417	WP_096375478.1	pilin	-
C4K21_RS26955 (C4K21_5497)	pilC	5987874..5989091 (+)	1218	WP_124312163.1	type II secretion system F family protein	Machinery gene
C4K21_RS26960 (C4K21_5498)	pilD	5989094..5989966 (+)	873	WP_009050909.1	A24 family peptidase	Machinery gene
C4K21_RS26965 (C4K21_5499)	coaE	5989963..5990586 (+)	624	WP_124312164.1	dephospho-CoA kinase	-
C4K21_RS26970 (C4K21_5500)	yacG	5990583..5990786 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K21_RS26975 (C4K21_5501)	-	5990791..5991006 (-)	216	WP_009050911.1	hypothetical protein	-
C4K21_RS26980 (C4K21_5502)	-	5991072..5991761 (-)	690	WP_124312165.1	energy-coupling factor ABC transporter permease	-
C4K21_RS26985 (C4K21_5503)	-	5991758..5992225 (-)	468	WP_124312166.1	FAD/FMN-containing dehydrogenase	-
C4K21_RS26990 (C4K21_5504)	-	5992681..5994117 (+)	1437	WP_124335560.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32050.22 Da
• Isoelectric Point: 7.9954

>NTDB_id=279870 C4K21_RS26960 WP_009050909.1 5989094..5989966(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain 464]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279870 C4K21_RS26960 WP_009050909.1 5989094..5989966(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain 464]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	97.931	0.517
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	50.909	94.828	0.483
pilD	Acinetobacter nosocomialis M2	50.182	94.828	0.476
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448