Detailed information NTG0279817

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K29_RS27750
• Genome accession: NZ_CP027740
• Coordinates: 6134009..6135337 (+)
• Length: 442 a.a.
• NCBI ID: WP_124305275.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzS140
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6129009..6140337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K29_RS27730 (C4K29_5619)	pgeF	6130507..6131232 (-)	726	WP_063433071.1	peptidoglycan editing factor PgeF	-
C4K29_RS27735 (C4K29_5620)	rluD	6131229..6132191 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K29_RS27740 (C4K29_5621)	-	6132344..6133366 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K29_RS27745 (C4K29_5622)	-	6133501..6133734 (+)	234	WP_025807532.1	PP0621 family protein	-
C4K29_RS27750 (C4K29_5624)	pilR	6134009..6135337 (+)	1329	WP_124305275.1	sigma-54-dependent transcriptional regulator	Regulator
C4K29_RS27755 (C4K29_5625)	thiO	6135334..6136434 (-)	1101	WP_102677083.1	glycine oxidase ThiO	-
C4K29_RS27760 (C4K29_5626)	-	6136489..6136890 (-)	402	WP_097305151.1	type IV pilin protein	-
C4K29_RS27765 (C4K29_5627)	-	6136904..6139975 (-)	3072	WP_124305276.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48835.09 Da
• Isoelectric Point: 8.5011

>NTDB_id=279817 C4K29_RS27750 WP_124305275.1 6134009..6135337(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS140]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALSRLHELLNSTLPGSTPANPATGPLLGDSAAMHKLRGQIGKLAQSQASIYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279817 C4K29_RS27750 WP_124305275.1 6134009..6135337(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS140]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACTGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGTTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGTCTCGCTTGCACGAACTGCTAAACAGCACCCTACCCGGATCGACACCAGCGAACCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGATCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGACATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGACCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCACAGGTGATCGACCTTGAAGATTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.889	100	0.681
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459