Detailed information NTG0279682

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K34_RS27130
• Genome accession: NZ_CP027735
• Coordinates: 6093456..6094784 (+)
• Length: 442 a.a.
• NCBI ID: WP_124303645.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain DTR133
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6088456..6099784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K34_RS27110 (C4K34_5480)	pgeF	6089954..6090679 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
C4K34_RS27115 (C4K34_5481)	rluD	6090676..6091638 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K34_RS27120 (C4K34_5482)	-	6091791..6092813 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K34_RS27125 (C4K34_5483)	-	6092948..6093181 (+)	234	WP_124303643.1	PP0621 family protein	-
C4K34_RS27130 (C4K34_5484)	pilR	6093456..6094784 (+)	1329	WP_124303645.1	sigma-54 dependent transcriptional regulator	Regulator
C4K34_RS27135 (C4K34_5485)	thiO	6094781..6095881 (-)	1101	WP_063433073.1	glycine oxidase ThiO	-
C4K34_RS27140 (C4K34_5486)	-	6095936..6096337 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K34_RS27145 (C4K34_5487)	-	6096351..6099419 (-)	3069	WP_063433074.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48888.25 Da
• Isoelectric Point: 8.9622

>NTDB_id=279682 C4K34_RS27130 WP_124303645.1 6093456..6094784(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain DTR133]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279682 C4K34_RS27130 WP_124303645.1 6093456..6094784(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain DTR133]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462