Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D9C16_RS13640 Genome accession   NZ_CP032861
Coordinates   2500285..2500881 (-) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2495285..2505881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS13630 (D9C16_13630) bofA 2499713..2499976 (-) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -
  D9C16_RS13635 (D9C16_13635) yaaL 2500043..2500267 (-) 225 WP_003242387.1 YaaL family protein -
  D9C16_RS13640 (D9C16_13640) recR 2500285..2500881 (-) 597 WP_003225425.1 recombination protein RecR Machinery gene
  D9C16_RS13645 (D9C16_13645) ebfC 2500896..2501219 (-) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  D9C16_RS13650 (D9C16_13650) dnaX 2501243..2502934 (-) 1692 WP_014478588.1 DNA polymerase III subunit gamma/tau -
  D9C16_RS13660 (D9C16_13660) tadA 2503411..2503896 (-) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  D9C16_RS13665 (D9C16_13665) yaaI 2503982..2504527 (+) 546 WP_014478587.1 isochorismatase family cysteine hydrolase -
  D9C16_RS13670 (D9C16_13670) sleL 2504597..2505880 (+) 1284 WP_014478586.1 glycoside hydrolase family 18 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=279658 D9C16_RS13640 WP_003225425.1 2500285..2500881(-) (recR) [Bacillus subtilis subsp. subtilis strain N1-1]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=279658 D9C16_RS13640 WP_003225425.1 2500285..2500881(-) (recR) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGCGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515