Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J87_RS14745 Genome accession   NZ_CP027734
Coordinates   3231211..3233436 (-) Length   741 a.a.
NCBI ID   WP_124367384.1    Uniprot ID   -
Organism   Pseudomonas sp. R1-43-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226211..3238436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J87_RS14710 (C4J87_2921) murB 3226580..3227599 (-) 1020 WP_124367379.1 UDP-N-acetylmuramate dehydrogenase -
  C4J87_RS14715 (C4J87_2922) - 3227596..3228060 (-) 465 WP_124367380.1 low molecular weight protein-tyrosine-phosphatase -
  C4J87_RS14720 (C4J87_2923) kdsB 3228060..3228824 (-) 765 WP_124367381.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J87_RS14725 (C4J87_2924) - 3228821..3229006 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J87_RS14730 (C4J87_2925) lpxK 3229031..3230041 (-) 1011 WP_124367382.1 tetraacyldisaccharide 4'-kinase -
  C4J87_RS14735 (C4J87_2926) - 3230041..3230469 (-) 429 WP_124367383.1 biopolymer transporter ExbD -
  C4J87_RS14740 (C4J87_2927) exbB 3230466..3231101 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J87_RS14745 (C4J87_2928) comA 3231211..3233436 (-) 2226 WP_124367384.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J87_RS14750 (C4J87_2929) - 3233572..3234087 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J87_RS14755 (C4J87_2930) - 3234091..3235449 (-) 1359 WP_124367385.1 sensor histidine kinase -
  C4J87_RS14760 (C4J87_2931) - 3235436..3236164 (-) 729 WP_124367386.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80494.56 Da        Isoelectric Point: 10.8648

>NTDB_id=279650 C4J87_RS14745 WP_124367384.1 3231211..3233436(-) (comA) [Pseudomonas sp. R1-43-08]
MRTGMFALALGLLTLRFLPALPPTGWLLAMLVLALMLVPFRTYPLAFFLMGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLTLLAGQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQALILRTRNHALLYDAGPRAGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETEGLPAFLGTEPCISGERWEWDGVSFVLWQWSGAISGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSKPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279650 C4J87_RS14745 WP_124367384.1 3231211..3233436(-) (comA) [Pseudomonas sp. R1-43-08]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGTTGCTGACCCTGCGTTTTCTACCGGCGTTGCCGCCGACCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGATGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGGGTGGAAGGG
CGCGTCGTCGGCTTGCCTCAGCAGACCGACACCGGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTCGCGCCAGCCCGCAATGCCCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCAACACATTGGTTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTGGGTTATGGACTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGCGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGCTTGCAACCGGGGTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCTCAGTGGCTGATTGCCATCGGTTTGTTTCCAGTCCTGCTGGTGCTGGGTT
TACCCATCAGCCTCACTGCGCCTGTGGCCAATTTATTCGCCGTGCCGTGGATCAGTCTGGTGGTGTTGCCTTTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGACCCTGCTGGCGGGGCAGTTGCCGGCCTGGACGCCGGCTGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGTTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTAACGGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCATTGATCTT
GCGCACCCGCAACCACGCCTTGCTTTACGACGCGGGGCCGCGTGCGGGGGCGGTCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCACGCCGGTGGTGCT
GCAGCTATCGCCCGTGGGCTGCCCATCCGGCGCGTGGTTGGCGGTGAAACCGAAGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTATCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCCGGCGCCATCAGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCATTGGCGGTGCCCACCGATTGGTTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAAGCCCTTTGTGCAACGGCTTGCGCCTGGATCAGTGCTGATCTCCAGAGGCCGTGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAACAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCTGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-669)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.031

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.025

100

0.372

Multiple sequence alignment